| Chain sequence(s) |
A: QVQLQQSGPELVKPGASVRMSCKTSGYTFTDYVISWFKQRPGQEREGIGEIFPRTGSTYYNENFKATATLTADKSSNTAYMQLSSLTSEDSAAYFCAFITSVDWAMEYWGQGTSVTVSS
C: RLLEMEFEERKRAAE input PDB |
| Selected Chain(s) | A,C |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:53)
[INFO] Main: Simulation completed successfully. (00:02:54)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2692 | |
| 2 | V | A | -0.7248 | |
| 3 | Q | A | -1.0075 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.7108 | |
| 6 | Q | A | -1.2795 | |
| 7 | S | A | -1.1997 | |
| 8 | G | A | -0.8392 | |
| 9 | P | A | -0.6002 | |
| 10 | E | A | -0.5314 | |
| 11 | L | A | 0.6975 | |
| 12 | V | A | -0.4517 | |
| 13 | K | A | -1.8141 | |
| 14 | P | A | -1.7442 | |
| 15 | G | A | -1.0149 | |
| 16 | A | A | -0.7441 | |
| 17 | S | A | -1.0233 | |
| 18 | V | A | 0.0000 | |
| 19 | R | A | -2.0609 | |
| 20 | M | A | 0.0000 | |
| 21 | S | A | -0.7287 | |
| 22 | C | A | 0.0000 | |
| 23 | K | A | -1.5643 | |
| 24 | T | A | 0.0000 | |
| 25 | S | A | -1.0809 | |
| 26 | G | A | -0.8360 | |
| 27 | Y | A | -0.4466 | |
| 28 | T | A | -0.5304 | |
| 29 | F | A | 0.0000 | |
| 30 | T | A | -1.2184 | |
| 31 | D | A | -0.7850 | |
| 32 | Y | A | -0.1071 | |
| 33 | V | A | 0.0000 | |
| 34 | I | A | 0.0000 | |
| 35 | S | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | -0.3977 | |
| 38 | K | A | -1.1550 | |
| 39 | Q | A | -2.2527 | |
| 40 | R | A | -2.8195 | |
| 41 | P | A | -2.0046 | |
| 42 | G | A | -1.9894 | |
| 43 | Q | A | -3.1020 | |
| 44 | E | A | -3.5328 | |
| 45 | R | A | -2.9207 | |
| 46 | E | A | -1.8386 | |
| 47 | G | A | -0.9035 | |
| 48 | I | A | 0.0000 | |
| 49 | G | A | -0.4432 | |
| 50 | E | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | F | A | 0.0000 | |
| 53 | P | A | 0.0000 | |
| 54 | R | A | -1.3763 | |
| 55 | T | A | -0.7361 | |
| 56 | G | A | -0.8248 | |
| 57 | S | A | -0.5066 | |
| 58 | T | A | -0.0930 | |
| 59 | Y | A | -0.5891 | |
| 60 | Y | A | -1.2301 | |
| 61 | N | A | -1.8462 | |
| 62 | E | A | -3.1702 | |
| 63 | N | A | -2.5637 | |
| 64 | F | A | -1.8168 | |
| 65 | K | A | -2.5923 | |
| 66 | A | A | -1.2024 | |
| 67 | T | A | -0.7288 | |
| 68 | A | A | 0.0000 | |
| 69 | T | A | -0.5263 | |
| 70 | L | A | 0.0000 | |
| 71 | T | A | -0.3877 | |
| 72 | A | A | -1.0621 | |
| 73 | D | A | -1.8053 | |
| 74 | K | A | -2.4905 | |
| 75 | S | A | -1.5114 | |
| 76 | S | A | -1.3864 | |
| 77 | N | A | -1.7886 | |
| 78 | T | A | 0.0000 | |
| 79 | A | A | 0.0000 | |
| 80 | Y | A | -0.2842 | |
| 81 | M | A | 0.0000 | |
| 82 | Q | A | -1.1185 | |
| 83 | L | A | 0.0000 | |
| 84 | S | A | -0.5779 | |
| 85 | S | A | -0.5691 | |
| 86 | L | A | -0.8576 | |
| 87 | T | A | -1.2165 | |
| 88 | S | A | -1.9036 | |
| 89 | E | A | -3.1686 | |
| 90 | D | A | -2.8624 | |
| 91 | S | A | -1.4381 | |
| 92 | A | A | -0.9376 | |
| 93 | A | A | -0.5454 | |
| 94 | Y | A | 0.0000 | |
| 95 | F | A | -0.2700 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | F | A | 0.0000 | |
| 99 | I | A | 0.0000 | |
| 100 | T | A | -0.2142 | |
| 101 | S | A | 0.0058 | |
| 102 | V | A | 0.8066 | |
| 103 | D | A | -0.9233 | |
| 104 | W | A | -0.3969 | |
| 105 | A | A | -0.4208 | |
| 106 | M | A | -0.2690 | |
| 107 | E | A | -1.2797 | |
| 108 | Y | A | -0.3043 | |
| 109 | W | A | -0.1814 | |
| 110 | G | A | -0.8109 | |
| 111 | Q | A | -1.3375 | |
| 112 | G | A | -0.9073 | |
| 113 | T | A | 0.0000 | |
| 114 | S | A | -0.5549 | |
| 115 | V | A | 0.0000 | |
| 116 | T | A | -0.9047 | |
| 117 | V | A | 0.0000 | |
| 118 | S | A | -1.4992 | |
| 119 | S | A | -1.0438 | |
| 1 | R | C | -0.9977 | |
| 2 | L | C | 0.9627 | |
| 3 | L | C | 0.3499 | |
| 4 | E | C | -0.1720 | |
| 5 | M | C | -0.3331 | |
| 6 | E | C | -1.0893 | |
| 7 | F | C | 0.0000 | |
| 8 | E | C | -1.6740 | |
| 9 | E | C | -2.9349 | |
| 10 | R | C | -2.1931 | |
| 11 | K | C | -2.2947 | |
| 12 | R | C | -3.0785 | |
| 13 | A | C | -1.6046 | |
| 14 | A | C | -1.9397 | |
| 15 | E | C | -2.4658 |