Project name: r00

Status: done

Started: 2026-04-01 10:42:34
Settings
Chain sequence(s) A: QVQLQQSGPELVKPGASVRMSCKTSGYTFTDYVISWFKQRPGQEREGIGEIFPRTGSTYYNENFKATATLTADKSSNTAYMQLSSLTSEDSAAYFCAFITSVDWAMEYWGQGTSVTVSS
C: RLLEMEFEERKRAAE
input PDB
Selected Chain(s) A,C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:54)
Show buried residues

Minimal score value
-3.5328
Maximal score value
0.9627
Average score
-0.9228
Total score value
-123.6596

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2692
2 V A -0.7248
3 Q A -1.0075
4 L A 0.0000
5 Q A -1.7108
6 Q A -1.2795
7 S A -1.1997
8 G A -0.8392
9 P A -0.6002
10 E A -0.5314
11 L A 0.6975
12 V A -0.4517
13 K A -1.8141
14 P A -1.7442
15 G A -1.0149
16 A A -0.7441
17 S A -1.0233
18 V A 0.0000
19 R A -2.0609
20 M A 0.0000
21 S A -0.7287
22 C A 0.0000
23 K A -1.5643
24 T A 0.0000
25 S A -1.0809
26 G A -0.8360
27 Y A -0.4466
28 T A -0.5304
29 F A 0.0000
30 T A -1.2184
31 D A -0.7850
32 Y A -0.1071
33 V A 0.0000
34 I A 0.0000
35 S A 0.0000
36 W A 0.0000
37 F A -0.3977
38 K A -1.1550
39 Q A -2.2527
40 R A -2.8195
41 P A -2.0046
42 G A -1.9894
43 Q A -3.1020
44 E A -3.5328
45 R A -2.9207
46 E A -1.8386
47 G A -0.9035
48 I A 0.0000
49 G A -0.4432
50 E A 0.0000
51 I A 0.0000
52 F A 0.0000
53 P A 0.0000
54 R A -1.3763
55 T A -0.7361
56 G A -0.8248
57 S A -0.5066
58 T A -0.0930
59 Y A -0.5891
60 Y A -1.2301
61 N A -1.8462
62 E A -3.1702
63 N A -2.5637
64 F A -1.8168
65 K A -2.5923
66 A A -1.2024
67 T A -0.7288
68 A A 0.0000
69 T A -0.5263
70 L A 0.0000
71 T A -0.3877
72 A A -1.0621
73 D A -1.8053
74 K A -2.4905
75 S A -1.5114
76 S A -1.3864
77 N A -1.7886
78 T A 0.0000
79 A A 0.0000
80 Y A -0.2842
81 M A 0.0000
82 Q A -1.1185
83 L A 0.0000
84 S A -0.5779
85 S A -0.5691
86 L A -0.8576
87 T A -1.2165
88 S A -1.9036
89 E A -3.1686
90 D A -2.8624
91 S A -1.4381
92 A A -0.9376
93 A A -0.5454
94 Y A 0.0000
95 F A -0.2700
96 C A 0.0000
97 A A 0.0000
98 F A 0.0000
99 I A 0.0000
100 T A -0.2142
101 S A 0.0058
102 V A 0.8066
103 D A -0.9233
104 W A -0.3969
105 A A -0.4208
106 M A -0.2690
107 E A -1.2797
108 Y A -0.3043
109 W A -0.1814
110 G A -0.8109
111 Q A -1.3375
112 G A -0.9073
113 T A 0.0000
114 S A -0.5549
115 V A 0.0000
116 T A -0.9047
117 V A 0.0000
118 S A -1.4992
119 S A -1.0438
1 R C -0.9977
2 L C 0.9627
3 L C 0.3499
4 E C -0.1720
5 M C -0.3331
6 E C -1.0893
7 F C 0.0000
8 E C -1.6740
9 E C -2.9349
10 R C -2.1931
11 K C -2.2947
12 R C -3.0785
13 A C -1.6046
14 A C -1.9397
15 E C -2.4658
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Laboratory of Theory of Biopolymers 2018