Project name: query_structure

Status: done

Started: 2026-03-16 20:32:14
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Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWHATFGDPFDSFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGTEYTVSIYGVGRHYTVYDSNPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:04)
Show buried residues

Minimal score value
-2.9999
Maximal score value
1.7815
Average score
-0.6476
Total score value
-60.2306

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 1.0592
2 P A 0.0485
3 A A -0.7226
4 P A 0.0000
5 K A -2.0321
6 N A -1.6417
7 L A -0.2944
8 V A 1.1339
9 V A 0.6863
10 S A -0.5924
11 R A -1.9839
12 V A -0.9691
13 T A -1.7458
14 E A -2.9975
15 D A -2.6630
16 S A -2.0392
17 A A 0.0000
18 R A -1.1929
19 L A 0.0000
20 S A -0.5568
21 W A 0.0000
22 H A -1.5786
23 A A 0.0000
24 T A 0.2110
25 F A 1.4324
26 G A 0.2170
27 D A -0.2802
28 P A -1.2252
29 F A 0.0000
30 D A -2.4661
31 S A -1.1794
32 F A 0.0000
33 L A 0.6023
34 I A 0.0000
35 Q A 0.4275
36 Y A 0.3506
37 Q A -0.8662
38 E A -1.7964
39 S A -1.5593
40 E A -2.3967
41 K A -1.8731
42 V A 0.0650
43 G A -0.9430
44 E A -1.5910
45 A A -0.3324
46 I A 0.8579
47 V A 1.6872
48 L A 1.1896
49 T A 0.3764
50 V A 0.0000
51 P A -1.1504
52 G A -1.2553
53 S A -0.9867
54 E A -1.4492
55 R A -1.2707
56 S A -0.8160
57 Y A -0.8130
58 D A -1.7160
59 L A 0.0000
60 T A -1.3564
61 G A -1.4824
62 L A 0.0000
63 K A -2.9999
64 P A -2.5517
65 G A -1.8825
66 T A -2.3124
67 E A -2.0790
68 Y A 0.0000
69 T A -0.0322
70 V A 0.0000
71 S A 0.2376
72 I A 0.0000
73 Y A -0.1713
74 G A 0.0000
75 V A 0.0000
76 G A 0.0000
77 R A -2.4258
78 H A -1.4026
79 Y A 0.1727
80 T A -0.2312
81 V A 0.1745
82 Y A -0.0769
83 D A -1.6514
84 S A -0.8518
85 N A -1.5232
86 P A -0.9857
87 L A -0.4175
88 S A 0.1213
89 A A 1.2244
90 I A 1.7815
91 F A 0.0000
92 T A -0.9073
93 T A -1.9699
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Laboratory of Theory of Biopolymers 2018