| Chain sequence(s) |
A: FEFEFEGGGKGH
C: FEFEFEGGGKGH B: FEFEFEGGGKGH E: FEFEFEGGGKGH D: FEFEFEGGGKGH G: FEFEFEGGGKGH F: FEFEFEGGGKGH I: FEFEFEGGGKGH H: FEFEFEGGGKGH K: FEFEFEGGGKGH J: FEFEFEGGGKGH M: FEFEFEGGGKGH L: FEFEFEGGGKGH O: FEFEFEGGGKGH N: FEFEFEGGGKGH Q: FEFEFEGGGKGH P: FEFEFEGGGKGH S: FEFEFEGGGKGH R: FEFEFEGGGKGH T: FEFEFEGGGKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:14:45)
[INFO] Main: Simulation completed successfully. (00:14:51)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 1.7621 | |
| 2 | E | A | 0.0000 | |
| 3 | F | A | 0.5528 | |
| 4 | E | A | 0.0000 | |
| 5 | F | A | 0.0604 | |
| 6 | E | A | 0.0000 | |
| 7 | G | A | -1.3427 | |
| 8 | G | A | -2.0694 | |
| 9 | G | A | -1.9404 | |
| 10 | K | A | -2.8639 | |
| 11 | G | A | -2.6654 | |
| 12 | H | A | -2.6010 | |
| 1 | F | B | 1.9010 | |
| 2 | E | B | 0.1338 | |
| 3 | F | B | -0.1353 | |
| 4 | E | B | 0.0000 | |
| 5 | F | B | -1.6309 | |
| 6 | E | B | -3.0155 | |
| 7 | G | B | 0.0000 | |
| 8 | G | B | -2.2799 | |
| 9 | G | B | -2.4346 | |
| 10 | K | B | -2.9885 | |
| 11 | G | B | -2.6574 | |
| 12 | H | B | -2.6535 | |
| 1 | F | C | 1.2971 | |
| 2 | E | C | -0.4971 | |
| 3 | F | C | -1.9211 | |
| 4 | E | C | -4.2178 | |
| 5 | F | C | 0.0000 | |
| 6 | E | C | -4.4184 | |
| 7 | G | C | 0.0000 | |
| 8 | G | C | -2.1684 | |
| 9 | G | C | -2.2368 | |
| 10 | K | C | -2.2248 | |
| 11 | G | C | -1.9274 | |
| 12 | H | C | -2.0099 | |
| 1 | F | D | 0.1621 | |
| 2 | E | D | -2.3044 | |
| 3 | F | D | 0.0000 | |
| 4 | E | D | -4.3531 | |
| 5 | F | D | -3.6793 | |
| 6 | E | D | -4.1415 | |
| 7 | G | D | -2.4859 | |
| 8 | G | D | -2.2766 | |
| 9 | G | D | -2.0972 | |
| 10 | K | D | -2.2987 | |
| 11 | G | D | -2.0509 | |
| 12 | H | D | -1.9180 | |
| 1 | F | E | -0.0045 | |
| 2 | E | E | -2.7043 | |
| 3 | F | E | -2.3628 | |
| 4 | E | E | -4.3092 | |
| 5 | F | E | -3.2529 | |
| 6 | E | E | -4.1264 | |
| 7 | G | E | -2.4740 | |
| 8 | G | E | -2.3018 | |
| 9 | G | E | -2.3271 | |
| 10 | K | E | -2.9619 | |
| 11 | G | E | -2.3767 | |
| 12 | H | E | -2.1065 | |
| 1 | F | F | 0.8519 | |
| 2 | E | F | -2.0142 | |
| 3 | F | F | -1.7638 | |
| 4 | E | F | -4.0523 | |
| 5 | F | F | -3.2055 | |
| 6 | E | F | -4.1925 | |
| 7 | G | F | -2.6592 | |
| 8 | G | F | -2.6094 | |
| 9 | G | F | -2.3864 | |
| 10 | K | F | -2.7593 | |
| 11 | G | F | -2.6054 | |
| 12 | H | F | -2.4021 | |
| 1 | F | G | 1.2016 | |
| 2 | E | G | -1.3583 | |
| 3 | F | G | -1.6083 | |
| 4 | E | G | -4.0032 | |
| 5 | F | G | -3.1048 | |
| 6 | E | G | -4.3598 | |
| 7 | G | G | -2.6997 | |
| 8 | G | G | -2.6221 | |
| 9 | G | G | -2.4669 | |
| 10 | K | G | -3.0774 | |
| 11 | G | G | -2.6030 | |
| 12 | H | G | -2.4203 | |
| 1 | F | H | 0.7638 | |
| 2 | E | H | -2.0611 | |
| 3 | F | H | -1.8753 | |
| 4 | E | H | -4.1305 | |
| 5 | F | H | -3.1928 | |
| 6 | E | H | -4.4035 | |
| 7 | G | H | -2.6706 | |
| 8 | G | H | -2.6268 | |
| 9 | G | H | -2.2733 | |
| 10 | K | H | -2.8666 | |
| 11 | G | H | -2.6377 | |
| 12 | H | H | -2.3041 | |
| 1 | F | I | -0.0069 | |
| 2 | E | I | -2.6130 | |
| 3 | F | I | -2.2679 | |
| 4 | E | I | -4.2521 | |
| 5 | F | I | -3.1528 | |
| 6 | E | I | -4.1872 | |
| 7 | G | I | -2.5758 | |
| 8 | G | I | -2.5036 | |
| 9 | G | I | -2.2475 | |
| 10 | K | I | -2.8300 | |
| 11 | G | I | -2.5709 | |
| 12 | H | I | -2.1840 | |
| 1 | F | J | -0.0282 | |
| 2 | E | J | -2.6903 | |
| 3 | F | J | -2.2906 | |
| 4 | E | J | -4.1118 | |
| 5 | F | J | -3.0606 | |
| 6 | E | J | -4.0380 | |
| 7 | G | J | -2.4740 | |
| 8 | G | J | -2.2600 | |
| 9 | G | J | -2.1291 | |
| 10 | K | J | -2.2071 | |
| 11 | G | J | -2.3564 | |
| 12 | H | J | -2.0690 | |
| 1 | F | K | 0.1811 | |
| 2 | E | K | -2.5100 | |
| 3 | F | K | -2.0620 | |
| 4 | E | K | -3.8028 | |
| 5 | F | K | -2.6480 | |
| 6 | E | K | -3.7521 | |
| 7 | G | K | -2.1180 | |
| 8 | G | K | -2.2543 | |
| 9 | G | K | -2.0502 | |
| 10 | K | K | -2.3467 | |
| 11 | G | K | -2.3797 | |
| 12 | H | K | -2.1827 | |
| 1 | F | L | 0.3607 | |
| 2 | E | L | -2.3141 | |
| 3 | F | L | -1.9249 | |
| 4 | E | L | -3.8045 | |
| 5 | F | L | -2.2917 | |
| 6 | E | L | -3.6819 | |
| 7 | G | L | -2.0623 | |
| 8 | G | L | -2.3950 | |
| 9 | G | L | -2.2556 | |
| 10 | K | L | -2.9981 | |
| 11 | G | L | -2.6418 | |
| 12 | H | L | -2.2744 | |
| 1 | F | M | 0.3738 | |
| 2 | E | M | -2.1982 | |
| 3 | F | M | -1.8850 | |
| 4 | E | M | -3.8553 | |
| 5 | F | M | -2.3247 | |
| 6 | E | M | -3.6738 | |
| 7 | G | M | -2.0738 | |
| 8 | G | M | -2.3316 | |
| 9 | G | M | -2.2939 | |
| 10 | K | M | -2.7016 | |
| 11 | G | M | -2.6482 | |
| 12 | H | M | -2.3239 | |
| 1 | F | N | 0.6850 | |
| 2 | E | N | -2.1671 | |
| 3 | F | N | -1.9363 | |
| 4 | E | N | -3.8644 | |
| 5 | F | N | -2.4192 | |
| 6 | E | N | -3.6753 | |
| 7 | G | N | -2.1099 | |
| 8 | G | N | -2.3405 | |
| 9 | G | N | -2.1682 | |
| 10 | K | N | -2.2621 | |
| 11 | G | N | -2.3759 | |
| 12 | H | N | -2.2584 | |
| 1 | F | O | 0.6623 | |
| 2 | E | O | -1.9964 | |
| 3 | F | O | -1.7263 | |
| 4 | E | O | -3.7457 | |
| 5 | F | O | -2.3147 | |
| 6 | E | O | -3.5885 | |
| 7 | G | O | -2.2181 | |
| 8 | G | O | -2.3882 | |
| 9 | G | O | -2.2484 | |
| 10 | K | O | -2.9109 | |
| 11 | G | O | -2.5253 | |
| 12 | H | O | -2.2442 | |
| 1 | F | P | 1.1962 | |
| 2 | E | P | -1.6161 | |
| 3 | F | P | -1.5283 | |
| 4 | E | P | -3.6380 | |
| 5 | F | P | -2.6285 | |
| 6 | E | P | -3.5966 | |
| 7 | G | P | -2.0858 | |
| 8 | G | P | -2.2875 | |
| 9 | G | P | -2.1451 | |
| 10 | K | P | -2.3732 | |
| 11 | G | P | -2.5109 | |
| 12 | H | P | -2.3792 | |
| 1 | F | Q | 1.4081 | |
| 2 | E | Q | -1.5612 | |
| 3 | F | Q | -1.4137 | |
| 4 | E | Q | -3.6825 | |
| 5 | F | Q | -2.3125 | |
| 6 | E | Q | -3.5255 | |
| 7 | G | Q | -2.0392 | |
| 8 | G | Q | -2.0724 | |
| 9 | G | Q | -1.7740 | |
| 10 | K | Q | 0.0000 | |
| 11 | G | Q | -2.0659 | |
| 12 | H | Q | -2.1453 | |
| 1 | F | R | 1.4535 | |
| 2 | E | R | -1.3181 | |
| 3 | F | R | 0.0000 | |
| 4 | E | R | -3.5979 | |
| 5 | F | R | 0.0000 | |
| 6 | E | R | -3.4320 | |
| 7 | G | R | -1.9755 | |
| 8 | G | R | -1.8749 | |
| 9 | G | R | -1.7378 | |
| 10 | K | R | 0.0000 | |
| 11 | G | R | -1.9468 | |
| 12 | H | R | -1.9771 | |
| 1 | F | S | 1.6474 | |
| 2 | E | S | -1.3665 | |
| 3 | F | S | 0.0000 | |
| 4 | E | S | -3.7146 | |
| 5 | F | S | 0.0000 | |
| 6 | E | S | -3.4723 | |
| 7 | G | S | 0.0000 | |
| 8 | G | S | -2.0452 | |
| 9 | G | S | -2.1838 | |
| 10 | K | S | -2.5928 | |
| 11 | G | S | -2.4053 | |
| 12 | H | S | -2.5629 | |
| 1 | F | T | 0.6958 | |
| 2 | E | T | -2.3296 | |
| 3 | F | T | 0.0000 | |
| 4 | E | T | -4.9815 | |
| 5 | F | T | 0.0000 | |
| 6 | E | T | -3.4894 | |
| 7 | G | T | -2.0436 | |
| 8 | G | T | -1.8901 | |
| 9 | G | T | 0.0000 | |
| 10 | K | T | -1.9880 | |
| 11 | G | T | -1.9009 | |
| 12 | H | T | -1.4885 |