Project name: query_structure

Status: done

Started: 2026-03-16 23:48:36
Settings
Chain sequence(s) F: IGKEFKRIVQRIKDFLRNLVPRTES
input PDB
Selected Chain(s) F
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with F chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:45)
Show buried residues

Minimal score value
-2.8093
Maximal score value
1.4256
Average score
-0.9866
Total score value
-23.6776

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
13 I F 1.2080
14 G F -0.6986
15 K F -2.5956
16 E F -2.3411
17 F F -0.4221
18 K F -2.4402
19 R F -2.8093
20 I F -0.8126
21 V F -1.0762
22 Q F -2.3837
23 R F -2.0630
24 I F -0.2327
25 K F -1.5841
26 D F -2.0899
27 F F 0.5855
28 L F 0.8431
29 R F -1.0723
30 N F -0.4371
31 L F 1.4256
32 V F 1.3760
33 P F -0.5140
34 R F -1.8864
35 T F -1.5388
36 E F -2.1181
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Laboratory of Theory of Biopolymers 2018