Project name: query_structure

Status: done

Started: 2026-03-17 00:55:18
Settings
Chain sequence(s) A: QVQLVESGGGSVQAGGSLRLSCAASGDISDISYLGWFRQAPGKEREGVAALWTWIGWTYYADSVKGRFTVSLDNAKNTVYLQMNSLKPEDTALYYCAAAYEGYHRPLWDWVYTYWGQGTQVTV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:07)
Show buried residues

Minimal score value
-3.7444
Maximal score value
2.4034
Average score
-0.6913
Total score value
-85.0267

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3684
2 V A -0.9350
3 Q A -1.1514
4 L A 0.0000
5 V A 0.5282
6 E A 0.0000
7 S A -0.7114
8 G A -1.2090
9 G A -1.1664
10 G A -0.8732
11 S A -0.5870
12 V A -0.5622
13 Q A -1.3360
14 A A -1.3775
15 G A -1.2617
16 G A -1.0168
17 S A -1.3002
18 L A -1.1700
19 R A -2.1955
20 L A 0.0000
21 S A -0.4460
22 C A 0.0000
23 A A -0.5203
24 A A 0.0000
25 S A -1.0061
26 G A -1.7881
27 D A -2.8848
28 I A 0.0000
29 S A -1.7828
30 D A -2.5731
31 I A 0.0000
32 S A -0.3616
33 Y A 0.0000
34 L A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A -0.5514
38 R A -1.3803
39 Q A -2.2161
40 A A -2.0572
41 P A -1.4681
42 G A -2.0065
43 K A -3.4435
44 E A -3.7444
45 R A -3.1481
46 E A -2.0666
47 G A -0.7988
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 L A 0.0000
52 W A 1.1604
53 T A 0.7506
54 W A 1.6458
55 I A 2.4034
56 G A 1.1389
57 W A 1.0776
58 T A 0.5486
59 Y A 0.0809
60 Y A -0.7173
61 A A 0.0000
62 D A -2.3919
63 S A -1.7904
64 V A 0.0000
65 K A -2.5483
66 G A -1.8301
67 R A -1.6439
68 F A 0.0000
69 T A -0.9497
70 V A 0.0000
71 S A -0.2945
72 L A -0.4895
73 D A -1.5425
74 N A -2.3476
75 A A -1.7985
76 K A -2.4897
77 N A -2.0990
78 T A 0.0000
79 V A 0.0000
80 Y A 0.0000
81 L A 0.0000
82 Q A -1.5280
83 M A 0.0000
84 N A -1.8810
85 S A -1.3350
86 L A 0.0000
87 K A -2.0614
88 P A -1.6695
89 E A -2.2135
90 D A 0.0000
91 T A -1.0110
92 A A 0.0000
93 L A -0.6267
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 A A 0.1339
100 Y A -0.7138
101 E A -1.9138
102 G A -1.0791
103 Y A -0.1335
104 H A -1.4628
105 R A -1.7714
106 P A -0.4951
107 L A 1.0141
108 W A 0.9119
109 D A -0.8899
110 W A 0.1929
111 V A 0.8735
112 Y A 0.8937
113 T A 0.8585
114 Y A 0.4468
115 W A 0.4721
116 G A -0.1306
117 Q A -0.9485
118 G A 0.0000
119 T A 0.0000
120 Q A -1.3039
121 V A 0.0000
122 T A -0.7557
123 V A -0.8359
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018