Project name: query_structure

Status: done

Started: 2026-03-16 23:21:10
Settings
Chain sequence(s) A: GGGCGETCVGGTCNTPGCTCSWPVCTRNGLPVT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:04)
Show buried residues

Minimal score value
-1.4386
Maximal score value
2.0006
Average score
0.1172
Total score value
3.8675

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.1561
2 G A -0.4116
3 G A -0.3740
4 C A -0.3090
5 G A -0.6197
6 E A -0.3373
7 T A 0.7149
8 C A 0.0000
9 V A 1.9280
10 G A 0.2968
11 G A 0.1074
12 T A -0.0063
13 C A -0.2661
14 N A -1.4386
15 T A -0.8780
16 P A -0.7658
17 G A -0.4150
18 C A -0.6285
19 T A -0.3050
20 C A 0.6711
21 S A 1.1124
22 W A 1.9734
23 P A 1.8365
24 V A 2.0006
25 C A 0.0000
26 T A -0.2062
27 R A -0.7849
28 N A -1.2367
29 G A -0.5534
30 L A 0.4548
31 P A 0.5870
32 V A 1.3081
33 T A 0.5687
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Laboratory of Theory of Biopolymers 2018