| Chain sequence(s) |
A: FEFEFEGKGH
C: FEFEFEGKGH B: FEFEFEGKGH E: FEFEFEGKGH D: FEFEFEGKGH G: FEFEFEGKGH F: FEFEFEGKGH H: FEFEFEGKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:27)
[INFO] Main: Simulation completed successfully. (00:03:29)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | -0.5517 | |
| 2 | E | A | -2.4606 | |
| 3 | F | A | -2.4358 | |
| 4 | E | A | -3.3316 | |
| 5 | F | A | -2.5671 | |
| 6 | E | A | -3.4202 | |
| 7 | G | A | 0.0000 | |
| 8 | K | A | -2.8496 | |
| 9 | G | A | 0.0000 | |
| 10 | H | A | -1.7461 | |
| 1 | F | B | -0.0668 | |
| 2 | E | B | -2.0368 | |
| 3 | F | B | -1.8056 | |
| 4 | E | B | -2.8261 | |
| 5 | F | B | -1.5288 | |
| 6 | E | B | -3.1044 | |
| 7 | G | B | -2.1184 | |
| 8 | K | B | -3.1187 | |
| 9 | G | B | -1.7966 | |
| 10 | H | B | -1.8390 | |
| 1 | F | C | 0.1064 | |
| 2 | E | C | -1.9714 | |
| 3 | F | C | -1.7995 | |
| 4 | E | C | -2.9356 | |
| 5 | F | C | -1.6473 | |
| 6 | E | C | -3.2281 | |
| 7 | G | C | -2.2970 | |
| 8 | K | C | -3.2794 | |
| 9 | G | C | -1.9170 | |
| 10 | H | C | -1.9372 | |
| 1 | F | D | -0.7445 | |
| 2 | E | D | -2.5302 | |
| 3 | F | D | -2.5497 | |
| 4 | E | D | -3.5264 | |
| 5 | F | D | -2.6173 | |
| 6 | E | D | -3.5437 | |
| 7 | G | D | 0.0000 | |
| 8 | K | D | -2.9640 | |
| 9 | G | D | 0.0000 | |
| 10 | H | D | -1.7444 | |
| 1 | F | E | 0.1493 | |
| 2 | E | E | -1.5444 | |
| 3 | F | E | 0.0000 | |
| 4 | E | E | -3.2561 | |
| 5 | F | E | -2.4953 | |
| 6 | E | E | -3.3215 | |
| 7 | G | E | 0.0000 | |
| 8 | K | E | -3.3389 | |
| 9 | G | E | 0.0000 | |
| 10 | H | E | -2.1725 | |
| 1 | F | F | -0.0902 | |
| 2 | E | F | -2.2651 | |
| 3 | F | F | -1.9508 | |
| 4 | E | F | -3.0157 | |
| 5 | F | F | -1.6527 | |
| 6 | E | F | -3.1590 | |
| 7 | G | F | -2.2419 | |
| 8 | K | F | -3.0579 | |
| 9 | G | F | -1.5242 | |
| 10 | H | F | -1.3461 | |
| 1 | F | G | -0.2040 | |
| 2 | E | G | -1.5138 | |
| 3 | F | G | -1.8791 | |
| 4 | E | G | -3.0700 | |
| 5 | F | G | -2.5543 | |
| 6 | E | G | -3.8018 | |
| 7 | G | G | 0.0000 | |
| 8 | K | G | -3.5112 | |
| 9 | G | G | 0.0000 | |
| 10 | H | G | -1.9101 | |
| 1 | F | H | 0.7115 | |
| 2 | E | H | -1.9543 | |
| 3 | F | H | -1.7958 | |
| 4 | E | H | -3.1209 | |
| 5 | F | H | -1.7766 | |
| 6 | E | H | -3.3650 | |
| 7 | G | H | -2.2780 | |
| 8 | K | H | -2.9930 | |
| 9 | G | H | -1.5773 | |
| 10 | H | H | -1.4941 |