| Chain sequence(s) |
A: GGGHKFF
C: GGGHKFF B: GGGHKFF E: GGGHKFF D: GGGHKFF G: GGGHKFF F: GGGHKFF I: GGGHKFF H: GGGHKFF K: GGGHKFF J: GGGHKFF L: GGGHKFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:00)
[INFO] Main: Simulation completed successfully. (00:02:03)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.0864 | |
| 2 | G | A | -1.0843 | |
| 3 | G | A | -1.2613 | |
| 4 | H | A | -1.2029 | |
| 5 | K | A | -0.6638 | |
| 6 | F | A | 0.0000 | |
| 7 | F | A | 3.1352 | |
| 1 | G | B | -1.1795 | |
| 2 | G | B | -1.2856 | |
| 3 | G | B | -1.6831 | |
| 4 | H | B | -1.4601 | |
| 5 | K | B | -0.6107 | |
| 6 | F | B | 0.0000 | |
| 7 | F | B | 3.2111 | |
| 1 | G | C | -1.0904 | |
| 2 | G | C | -1.2623 | |
| 3 | G | C | -1.8510 | |
| 4 | H | C | -1.6569 | |
| 5 | K | C | -0.8563 | |
| 6 | F | C | 2.1177 | |
| 7 | F | C | 3.1866 | |
| 1 | G | D | -1.1520 | |
| 2 | G | D | -1.1840 | |
| 3 | G | D | -1.6000 | |
| 4 | H | D | -1.3945 | |
| 5 | K | D | -1.3647 | |
| 6 | F | D | 0.5693 | |
| 7 | F | D | 2.4445 | |
| 1 | G | E | -1.2547 | |
| 2 | G | E | -1.2427 | |
| 3 | G | E | -1.5410 | |
| 4 | H | E | -1.5063 | |
| 5 | K | E | -0.7428 | |
| 6 | F | E | 0.0000 | |
| 7 | F | E | 2.9080 | |
| 1 | G | F | -1.2426 | |
| 2 | G | F | -1.2081 | |
| 3 | G | F | -1.2740 | |
| 4 | H | F | -1.1817 | |
| 5 | K | F | -0.7964 | |
| 6 | F | F | 0.0000 | |
| 7 | F | F | 3.1615 | |
| 1 | G | G | -1.2679 | |
| 2 | G | G | -1.2545 | |
| 3 | G | G | -1.5243 | |
| 4 | H | G | -1.4503 | |
| 5 | K | G | -0.7566 | |
| 6 | F | G | 0.0000 | |
| 7 | F | G | 2.6993 | |
| 1 | G | H | -1.0294 | |
| 2 | G | H | -1.2999 | |
| 3 | G | H | -1.4682 | |
| 4 | H | H | -1.5344 | |
| 5 | K | H | -1.2570 | |
| 6 | F | H | 0.9172 | |
| 7 | F | H | 2.5181 | |
| 1 | G | I | -0.9774 | |
| 2 | G | I | -1.4564 | |
| 3 | G | I | -1.6657 | |
| 4 | H | I | -1.5809 | |
| 5 | K | I | -0.2295 | |
| 6 | F | I | 2.4799 | |
| 7 | F | I | 3.4813 | |
| 1 | G | J | -1.2040 | |
| 2 | G | J | -1.3464 | |
| 3 | G | J | -1.6135 | |
| 4 | H | J | -1.2873 | |
| 5 | K | J | -0.2334 | |
| 6 | F | J | 0.0000 | |
| 7 | F | J | 3.6496 | |
| 1 | G | K | -1.1249 | |
| 2 | G | K | -1.1395 | |
| 3 | G | K | -1.2566 | |
| 4 | H | K | -1.1886 | |
| 5 | K | K | -0.5513 | |
| 6 | F | K | 0.0000 | |
| 7 | F | K | 3.2687 | |
| 1 | G | L | -1.0871 | |
| 2 | G | L | -1.0815 | |
| 3 | G | L | -1.2126 | |
| 4 | H | L | -1.1293 | |
| 5 | K | L | -0.5292 | |
| 6 | F | L | 0.0000 | |
| 7 | F | L | 2.9223 |