| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSSAASGFPVYAYVMAWYRQAPGKEREWVAAIKSQGVSTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYSYVYVGTSYTGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:16)
[INFO] Main: Simulation completed successfully. (00:01:16)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4907 | |
| 2 | V | A | -0.8749 | |
| 3 | Q | A | -0.8163 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.2284 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5749 | |
| 8 | G | A | -1.0663 | |
| 9 | G | A | -0.8690 | |
| 10 | G | A | -0.1108 | |
| 11 | L | A | 0.9080 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.3015 | |
| 14 | A | A | -1.3858 | |
| 15 | G | A | -1.2909 | |
| 16 | G | A | -0.8716 | |
| 17 | S | A | -1.1022 | |
| 18 | L | A | -1.0205 | |
| 19 | R | A | -2.3071 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4897 | |
| 22 | S | A | 0.0000 | |
| 23 | A | A | -0.0675 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7075 | |
| 26 | G | A | -1.0812 | |
| 27 | F | A | 0.0000 | |
| 28 | P | A | -0.3575 | |
| 29 | V | A | 0.0000 | |
| 30 | Y | A | 0.1575 | |
| 31 | A | A | 0.2672 | |
| 32 | Y | A | 0.9573 | |
| 33 | V | A | 1.0445 | |
| 34 | M | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.2370 | |
| 38 | R | A | -1.3252 | |
| 39 | Q | A | -2.2455 | |
| 40 | A | A | -2.1473 | |
| 41 | P | A | -1.5026 | |
| 42 | G | A | -2.0055 | |
| 43 | K | A | -3.4423 | |
| 44 | E | A | -3.7204 | |
| 45 | R | A | -3.0557 | |
| 46 | E | A | -1.8861 | |
| 47 | W | A | -0.5354 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | K | A | -0.0501 | |
| 53 | S | A | 0.0265 | |
| 54 | Q | A | -0.6897 | |
| 55 | G | A | -0.1514 | |
| 56 | V | A | 1.1677 | |
| 57 | S | A | 0.5856 | |
| 58 | T | A | 0.6511 | |
| 59 | Y | A | 0.4452 | |
| 60 | Y | A | -0.3902 | |
| 61 | A | A | -1.1184 | |
| 62 | D | A | -2.3364 | |
| 63 | S | A | -1.8403 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5189 | |
| 66 | G | A | -1.7839 | |
| 67 | R | A | -1.5149 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.8850 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.9285 | |
| 72 | R | A | -1.7140 | |
| 73 | D | A | -2.0683 | |
| 74 | N | A | -2.1158 | |
| 75 | A | A | -1.5631 | |
| 76 | K | A | -2.4486 | |
| 77 | N | A | -1.7273 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | 0.0000 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.6318 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.3677 | |
| 85 | S | A | -1.1123 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.1611 | |
| 88 | P | A | -1.8591 | |
| 89 | E | A | -2.2965 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9950 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7631 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.1758 | |
| 96 | S | A | 0.0000 | |
| 97 | Y | A | 0.6248 | |
| 98 | V | A | 0.0000 | |
| 99 | Y | A | 1.6294 | |
| 100 | V | A | 0.9564 | |
| 101 | G | A | 0.0451 | |
| 102 | T | A | 0.2405 | |
| 103 | S | A | 0.4615 | |
| 104 | Y | A | 0.3408 | |
| 105 | T | A | 0.1940 | |
| 106 | G | A | 0.0000 | |
| 107 | Q | A | -0.9099 | |
| 108 | G | A | -0.5109 | |
| 109 | T | A | 0.0000 | |
| 110 | Q | A | -1.2305 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | -0.3583 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.7713 |