| Chain sequence(s) |
A: EDEDEDEDEDEDGGKGHFG
C: EDEDEDEDEDEDGGKGHFG B: EDEDEDEDEDEDGGKGHFG D: EDEDEDEDEDEDGGKGHFG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:49)
[INFO] Main: Simulation completed successfully. (00:01:50)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | A | -4.6167 | |
| 2 | D | A | -5.6165 | |
| 3 | E | A | -6.5253 | |
| 4 | D | A | -6.4784 | |
| 5 | E | A | -6.3690 | |
| 6 | D | A | -5.5839 | |
| 7 | E | A | -5.7088 | |
| 8 | D | A | -5.3017 | |
| 9 | E | A | -5.3729 | |
| 10 | D | A | -4.9246 | |
| 11 | E | A | -4.7282 | |
| 12 | D | A | -4.1575 | |
| 13 | G | A | -2.8612 | |
| 14 | G | A | -3.0612 | |
| 15 | K | A | -3.0573 | |
| 16 | G | A | -1.2684 | |
| 17 | H | A | -0.5850 | |
| 18 | F | A | 1.7658 | |
| 19 | G | A | -0.0975 | |
| 1 | E | B | -4.3718 | |
| 2 | D | B | -5.9228 | |
| 3 | E | B | -6.4657 | |
| 4 | D | B | -6.7399 | |
| 5 | E | B | -6.4964 | |
| 6 | D | B | -6.2206 | |
| 7 | E | B | -6.0202 | |
| 8 | D | B | -5.5024 | |
| 9 | E | B | -5.8109 | |
| 10 | D | B | -5.7452 | |
| 11 | E | B | -5.3473 | |
| 12 | D | B | -4.8705 | |
| 13 | G | B | -3.4353 | |
| 14 | G | B | -2.6410 | |
| 15 | K | B | -2.6634 | |
| 16 | G | B | -1.0713 | |
| 17 | H | B | -0.3831 | |
| 18 | F | B | 1.6047 | |
| 19 | G | B | 0.4534 | |
| 1 | E | C | -4.4200 | |
| 2 | D | C | -5.9742 | |
| 3 | E | C | -6.5093 | |
| 4 | D | C | -6.9805 | |
| 5 | E | C | -6.6864 | |
| 6 | D | C | -6.5542 | |
| 7 | E | C | -6.0777 | |
| 8 | D | C | -5.3352 | |
| 9 | E | C | -5.5733 | |
| 10 | D | C | -5.7172 | |
| 11 | E | C | -5.3265 | |
| 12 | D | C | -4.9405 | |
| 13 | G | C | -3.3635 | |
| 14 | G | C | -2.7797 | |
| 15 | K | C | -2.8602 | |
| 16 | G | C | -1.1329 | |
| 17 | H | C | -0.3852 | |
| 18 | F | C | 1.6326 | |
| 19 | G | C | 0.6486 | |
| 1 | E | D | -4.6007 | |
| 2 | D | D | -5.6667 | |
| 3 | E | D | -6.6823 | |
| 4 | D | D | -6.8181 | |
| 5 | E | D | -6.8659 | |
| 6 | D | D | -6.5545 | |
| 7 | E | D | -6.0887 | |
| 8 | D | D | -5.3575 | |
| 9 | E | D | -5.3619 | |
| 10 | D | D | -4.8335 | |
| 11 | E | D | -4.8007 | |
| 12 | D | D | -4.3635 | |
| 13 | G | D | -2.9935 | |
| 14 | G | D | -3.3298 | |
| 15 | K | D | -2.9517 | |
| 16 | G | D | -1.3419 | |
| 17 | H | D | -0.3478 | |
| 18 | F | D | 1.7399 | |
| 19 | G | D | 0.4803 |