Project name: query_structure

Status: done

Started: 2026-03-16 20:27:32
Settings
Chain sequence(s) A: LPAPKNLVVSEVTEDSLRLSVVTWPYADLDSFLIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIYGVHNVYKDTNMRGLPLSAEFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:03)
Show buried residues

Minimal score value
-3.0361
Maximal score value
1.182
Average score
-0.9731
Total score value
-92.4469

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.2683
2 P A 0.0358
3 A A -0.1221
4 P A 0.0000
5 K A -2.0223
6 N A -1.3770
7 L A -0.1988
8 V A 0.7379
9 V A -0.2963
10 S A -0.8384
11 E A -2.0396
12 V A -0.9461
13 T A -1.7362
14 E A -3.0192
15 D A -2.6897
16 S A -2.1494
17 L A 0.0000
18 R A -1.8194
19 L A 0.0000
20 S A -0.6408
21 V A 0.0000
22 V A 0.2122
23 T A -0.4972
24 W A -0.6187
25 P A -0.4095
26 Y A -0.0508
27 A A -0.7996
28 D A -2.1501
29 L A -1.8167
30 D A -2.4678
31 S A -1.7470
32 F A 0.0000
33 L A -0.3005
34 I A 0.0000
35 Q A -0.2795
36 Y A -0.3053
37 Q A -1.2008
38 E A -1.9635
39 S A -2.0027
40 E A -2.5005
41 K A -1.8556
42 V A 0.0338
43 G A -0.7653
44 E A -1.7564
45 A A -0.4856
46 I A 0.3962
47 N A -0.5530
48 L A 0.1732
49 T A -0.1409
50 V A 0.0000
51 P A -1.2269
52 G A -1.7418
53 S A -1.6551
54 E A -1.8494
55 R A -1.9299
56 S A -1.4323
57 Y A 0.0000
58 D A -2.3048
59 L A 0.0000
60 T A -1.5227
61 G A -1.4898
62 L A 0.0000
63 K A -3.0361
64 P A -2.6357
65 G A -1.8965
66 T A -2.2400
67 E A -2.7046
68 Y A 0.0000
69 T A -1.4279
70 V A 0.0000
71 S A 0.0000
72 I A 0.0000
73 Y A 0.0000
74 G A 0.0000
75 V A -1.2878
76 H A -1.5058
77 N A -1.8552
78 V A 0.0134
79 Y A 0.1097
80 K A -2.0195
81 D A -2.3981
82 T A -1.5225
83 N A -2.2228
84 M A -1.2691
85 R A -1.5462
86 G A 0.0000
87 L A 1.1820
88 P A 0.5230
89 L A 0.0545
90 S A -0.4037
91 A A -0.8053
92 E A -2.1365
93 F A 0.0000
94 T A -1.6283
95 T A -1.9303
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Laboratory of Theory of Biopolymers 2018