Project name: query_structure

Status: done

Started: 2026-03-17 01:14:11
Settings
Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDAPRTPKHYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYLYQLPLPSKPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:44)
Show buried residues

Minimal score value
-3.6803
Maximal score value
1.9364
Average score
-0.6933
Total score value
-62.3973

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.2779
2 S A -0.3353
3 D A -1.2135
4 V A -1.2138
5 P A 0.0000
6 R A -3.6803
7 D A -3.5752
8 L A -2.2768
9 E A -2.1021
10 V A 0.1115
11 V A 1.5439
12 A A 0.8899
13 A A 0.2989
14 T A -0.5324
15 P A -1.1360
16 T A -1.0048
17 S A -0.5344
18 L A 0.0000
19 L A 0.7301
20 I A 0.0000
21 S A -1.1693
22 W A 0.0000
23 D A -3.6156
24 A A -2.4150
25 P A -1.9316
26 R A -2.3516
27 T A -1.8228
28 P A -1.7630
29 K A -1.8921
30 H A -0.3397
31 Y A 0.6863
32 Y A 0.0000
33 R A -0.2985
34 I A 0.0000
35 T A 0.0000
36 Y A 0.0000
37 G A 0.0000
38 E A -1.5279
39 T A -1.2331
40 G A -1.2227
41 G A -1.3520
42 N A -1.5282
43 S A -0.8293
44 P A -0.3159
45 V A 0.4284
46 Q A -0.8509
47 E A -1.7212
48 F A -0.7708
49 T A 0.0032
50 V A 0.0000
51 P A -0.6139
52 G A 0.0000
53 S A -1.4184
54 K A -1.7621
55 S A -1.5402
56 T A -0.7093
57 A A 0.0000
58 T A 0.2326
59 I A 0.0000
60 S A -0.6571
61 G A -1.0307
62 L A 0.0000
63 K A -2.3698
64 P A -1.6607
65 G A -1.4412
66 V A -1.4323
67 D A -2.0454
68 Y A 0.0000
69 T A -0.7975
70 I A 0.0000
71 T A -0.2423
72 V A 0.0000
73 Y A 0.1504
74 L A 0.0000
75 Y A 1.7085
76 Q A 1.1039
77 L A 1.9364
78 P A 1.3505
79 L A 1.6108
80 P A 0.5310
81 S A -0.2251
82 K A -1.6066
83 P A -0.9411
84 I A -1.0008
85 S A -0.9403
86 I A -0.7399
87 N A -1.7169
88 Y A -1.4192
89 R A -2.4985
90 T A -1.6264
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018