Project name: query_structure

Status: done

Started: 2026-03-17 01:30:29
Settings
Chain sequence(s) A: VSSVPTKLEVVAATPTSLLISWDAYYDEVMYYRITYGETGGNSPVQEFTVPGSSSTATISGLKPGVDYTITVYAYWGEWYFSPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:40)
Show buried residues

Minimal score value
-2.5181
Maximal score value
1.9703
Average score
-0.3486
Total score value
-31.3697

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6767
2 S A 0.6074
3 S A 0.6426
4 V A 0.3824
5 P A 0.0000
6 T A -1.2784
7 K A -2.5137
8 L A 0.0000
9 E A -1.4491
10 V A 0.3286
11 V A 1.6564
12 A A 0.9508
13 A A 0.3043
14 T A -0.5240
15 P A -1.1300
16 T A -0.9963
17 S A -0.5290
18 L A 0.0000
19 L A 0.8067
20 I A 0.0000
21 S A -0.6328
22 W A 0.0000
23 D A -2.0358
24 A A -0.7879
25 Y A 0.5350
26 Y A -0.2461
27 D A -1.8002
28 E A -1.5836
29 V A 0.0000
30 M A 0.7826
31 Y A 0.8546
32 Y A 0.0000
33 R A -0.2962
34 I A 0.0000
35 T A 0.0000
36 Y A -0.3649
37 G A 0.0000
38 E A -1.5397
39 T A -1.2324
40 G A -1.2279
41 G A -1.3860
42 N A -1.5223
43 S A -0.8364
44 P A -0.3423
45 V A 0.3773
46 Q A -0.9819
47 E A -1.6972
48 F A -0.6695
49 T A -0.1814
50 V A 0.2325
51 P A 0.1112
52 G A -0.0738
53 S A -0.4870
54 S A -0.2630
55 S A -0.4543
56 T A -0.1990
57 A A 0.0000
58 T A 0.3040
59 I A 0.0000
60 S A -0.6582
61 G A -1.0297
62 L A 0.0000
63 K A -2.3672
64 P A -1.6641
65 G A -1.4473
66 V A -1.4033
67 D A -2.0781
68 Y A 0.0000
69 T A -0.7642
70 I A 0.0000
71 T A -0.1708
72 V A 0.0000
73 Y A 0.5723
74 A A 0.0000
75 Y A 1.1443
76 W A 0.8552
77 G A -0.0032
78 E A -0.7406
79 W A 1.2992
80 Y A 1.9703
81 F A 1.3538
82 S A 0.3357
83 P A 0.2812
84 I A 0.0272
85 S A -0.4903
86 I A -0.6200
87 N A -1.6543
88 Y A -1.3879
89 R A -2.5181
90 T A -1.5026
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018