Project name: attr native

Status: done

Started: 2025-02-06 22:02:46
Settings
Chain sequence(s) B: CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTN
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:11)
Show buried residues

Minimal score value
-3.2286
Maximal score value
1.8408
Average score
-0.6134
Total score value
-70.5396

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
10 C B -0.6996
11 P B 0.0000
12 L B 0.0000
13 M B -0.3016
14 V B 0.0000
15 K B -0.4839
16 V B 0.0000
17 L B 0.6267
18 D B 0.0000
19 A B 0.5995
20 V B 0.8740
21 R B -0.9462
22 G B -0.5700
23 S B -0.4346
24 P B -0.6660
25 A B 0.0000
26 I B -1.0292
27 N B -2.0722
28 V B 0.0000
29 A B -1.3211
30 V B 0.0000
31 H B -1.0026
32 V B 0.0000
33 F B -0.4846
34 R B -0.7340
35 K B -1.3036
36 A B -1.6740
37 A B -1.4986
38 D B -2.6701
39 D B -2.9822
40 T B -1.9682
41 W B -1.3570
42 E B -2.1266
43 P B -1.1310
44 F B -0.6208
45 A B -0.3922
46 S B -0.8642
47 G B -1.5036
48 K B -2.5978
49 T B 0.0000
50 S B -1.9093
51 E B -2.2242
52 S B -1.2043
53 G B 0.0000
54 E B -1.4494
55 L B -1.4387
56 H B -1.3774
57 G B -0.7829
58 L B -0.3390
59 T B 0.0000
60 T B -1.6566
61 E B -2.9595
62 E B -2.8691
63 E B -2.2250
64 F B -1.3420
65 V B -0.4717
66 E B -1.5812
67 G B -0.3816
68 I B 1.0018
69 Y B 0.0000
70 K B 0.2105
71 V B 0.0000
72 E B -0.8929
73 I B 0.0000
74 D B -1.7644
75 T B 0.0000
76 K B -1.9693
77 S B -1.5714
78 Y B 0.0000
79 W B 0.0000
80 K B -1.8386
81 A B -0.7175
82 L B -0.0199
83 G B -0.5523
84 I B 0.0033
85 S B 0.0026
86 P B 0.1530
87 F B 1.5703
88 H B -0.5045
89 E B -2.2395
90 H B -1.6945
91 A B 0.0000
92 E B -0.9676
93 V B 0.3987
94 V B 1.4550
95 F B 1.1569
96 T B 0.1324
97 A B 0.0000
98 N B -2.1203
99 D B -2.8127
100 S B -1.8488
101 G B -1.6753
102 P B -1.8535
103 R B -3.2286
104 R B -1.6261
105 Y B -0.0815
106 T B 0.3568
107 I B 0.0000
108 A B 0.3110
109 A B 0.0000
110 L B 1.3316
111 L B 0.0000
112 S B 1.1704
113 P B 1.0340
114 Y B 1.8408
115 S B 1.0140
116 Y B 0.7895
117 S B 0.2938
118 T B 0.2326
119 T B 0.4199
120 A B 0.8470
121 V B 1.5398
122 V B 0.4507
123 T B -0.7422
124 N B -1.9874
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018