| Chain sequence(s) |
A: AVCSQEAMTGPCRAVMPRWYFDLSKGKCVRFIYGGGGNRNNFESEDYCMVCKAM
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:19)
[INFO] Main: Simulation completed successfully. (00:01:20)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | -0.0319 | |
| 2 | V | A | -0.5625 | |
| 3 | C | A | -0.2446 | |
| 4 | S | A | -0.5940 | |
| 5 | Q | A | -1.6023 | |
| 6 | E | A | -2.1030 | |
| 7 | A | A | -1.1524 | |
| 8 | M | A | -0.4615 | |
| 9 | T | A | 0.1831 | |
| 10 | G | A | -0.3439 | |
| 11 | P | A | -0.5855 | |
| 12 | C | A | -0.4599 | |
| 13 | R | A | -1.1266 | |
| 14 | A | A | 0.3003 | |
| 15 | V | A | 1.8511 | |
| 16 | M | A | 0.9990 | |
| 17 | P | A | 0.0366 | |
| 18 | R | A | -0.8645 | |
| 19 | W | A | -1.2543 | |
| 20 | Y | A | -0.8736 | |
| 21 | F | A | 0.0000 | |
| 22 | D | A | -1.2771 | |
| 23 | L | A | -0.2175 | |
| 24 | S | A | -0.6918 | |
| 25 | K | A | -1.8881 | |
| 26 | G | A | -1.5186 | |
| 27 | K | A | -2.1442 | |
| 28 | C | A | -1.3175 | |
| 29 | V | A | -1.0768 | |
| 30 | R | A | -1.6209 | |
| 31 | F | A | 0.3098 | |
| 32 | I | A | 1.3151 | |
| 33 | Y | A | 0.5650 | |
| 34 | G | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | G | A | -0.8819 | |
| 37 | G | A | -0.9088 | |
| 38 | N | A | -1.5022 | |
| 39 | R | A | -2.2243 | |
| 40 | N | A | 0.0000 | |
| 41 | N | A | -1.3780 | |
| 42 | F | A | 0.0000 | |
| 43 | E | A | -2.3789 | |
| 44 | S | A | -1.9876 | |
| 45 | E | A | -2.3030 | |
| 46 | D | A | -1.6787 | |
| 47 | Y | A | -0.1023 | |
| 48 | C | A | 0.0000 | |
| 49 | M | A | -0.2910 | |
| 50 | V | A | 0.7402 | |
| 51 | C | A | 0.0000 | |
| 52 | K | A | -0.8495 | |
| 53 | A | A | 0.1604 | |
| 54 | M | A | 0.8805 |