Project name: CM403-426 Mod3

Status: done

Started: 2026-02-20 14:22:55
Settings
Chain sequence(s) A: DNAITNLLAGRVSQMRMLPLGVLS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:19)
Show buried residues

Minimal score value
-1.93
Maximal score value
2.9003
Average score
0.7034
Total score value
16.8807

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -1.9300
2 N A -1.4532
3 A A 0.0554
4 I A 1.5576
5 T A 0.1969
6 N A -0.0963
7 L A 1.9110
8 L A 1.9412
9 A A 0.9067
10 G A -0.0322
11 R A -0.7617
12 V A 0.8767
13 S A -0.1504
14 Q A -0.7677
15 M A 0.0435
16 R A -0.6290
17 M A 1.1536
18 L A 2.0188
19 P A 1.3711
20 L A 1.9187
21 G A 1.7534
22 V A 2.9003
23 L A 2.8026
24 S A 1.2937
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Laboratory of Theory of Biopolymers 2018