Project name: eMA

Status: done

Started: 2025-02-26 02:54:28
Settings
Chain sequence(s) A: MFDASNFKDFSSIASASSSWQNQHGSTMIIQVDSFGNVSGQYVNRAEGTGCQNSPYPLTGRVNGTFIDFSVKWNNSTENCNSNTQWTGYAQVNGNNTEIVTRWNLKYEGGSGPAIWQGQDTFQYVPTTE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:56)
Show buried residues

Minimal score value
-2.7173
Maximal score value
1.7254
Average score
-0.821
Total score value
-105.906

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.6473
2 F A 1.7254
3 D A -0.2093
4 A A -0.1767
5 S A -0.5636
6 N A -1.0210
7 F A -0.3988
8 K A -0.8630
9 D A -1.4003
10 F A 0.0000
11 S A -1.2959
12 S A -0.8544
13 I A 0.0000
14 A A 0.0000
15 S A -0.9230
16 A A -0.6166
17 S A -0.5193
18 S A 0.0000
19 S A -0.0565
20 W A 0.0000
21 Q A -0.8701
22 N A 0.0000
23 Q A -1.8992
24 H A -1.7729
25 G A -1.3528
26 S A 0.0000
27 T A -0.7066
28 M A 0.0000
29 I A -0.0346
30 I A 0.0000
31 Q A -1.5972
32 V A -1.1941
33 D A -1.0945
34 S A 0.1208
35 F A 1.0364
36 G A -0.6844
37 N A -1.2480
38 V A 0.0000
39 S A -1.2025
40 G A -0.7604
41 Q A -0.7621
42 Y A 0.0000
43 V A 0.0000
44 N A 0.0000
45 R A -2.2896
46 A A -2.1388
47 E A -2.5373
48 G A -1.6352
49 T A -1.2873
50 G A -1.6568
51 C A 0.0000
52 Q A -2.2473
53 N A -1.9717
54 S A -1.4105
55 P A -1.0157
56 Y A 0.0000
57 P A -1.0176
58 L A 0.0000
59 T A -1.1998
60 G A -1.4192
61 R A -1.7507
62 V A 0.0000
63 N A -1.2114
64 G A -0.9708
65 T A -0.0734
66 F A 0.7975
67 I A 0.0000
68 D A -1.4017
69 F A 0.0000
70 S A -1.1696
71 V A 0.0000
72 K A -2.3387
73 W A 0.0000
74 N A -2.5647
75 N A -1.7377
76 S A -1.0913
77 T A -1.2503
78 E A -2.3766
79 N A -2.4538
80 C A -1.9085
81 N A -2.4701
82 S A -1.6912
83 N A -1.4513
84 T A 0.0000
85 Q A -1.8808
86 W A 0.0000
87 T A -0.9875
88 G A 0.0000
89 Y A 0.6366
90 A A 0.0000
91 Q A -0.4580
92 V A -1.2615
93 N A -2.0538
94 G A -1.8876
95 N A -2.0603
96 N A -1.7587
97 T A -1.0723
98 E A -0.8241
99 I A 0.0000
100 V A -0.1355
101 T A 0.0000
102 R A -2.7173
103 W A -1.8127
104 N A -1.0574
105 L A -0.4275
106 K A -1.1701
107 Y A -0.8656
108 E A -2.1084
109 G A -1.1381
110 G A -1.0722
111 S A -0.9160
112 G A -0.8650
113 P A -0.9563
114 A A -0.0568
115 I A 1.1466
116 W A 0.9729
117 Q A -1.2516
118 G A -1.4216
119 Q A -2.2885
120 D A 0.0000
121 T A -0.9990
122 F A 0.0000
123 Q A -1.0778
124 Y A -0.1052
125 V A 0.2548
126 P A -0.2698
127 T A -0.5759
128 T A -0.9861
129 E A -1.9089
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Laboratory of Theory of Biopolymers 2018