Project name: Nb_B

Status: done

Started: 2025-07-16 08:37:16
Settings
Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASGLPEPSIAVYSLGWFRQAPGQGLEAVAAIDNTGKKTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAAGYNPGEPATEPEDYDYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:07)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:07)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:08)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:08)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:08)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:51)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:52)
Show buried residues

Minimal score value
-3.1989
Maximal score value
1.6955
Average score
-0.7416
Total score value
-94.9271

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5029
2 V A -0.9399
3 Q A -0.9680
4 L A 0.0000
5 V A 1.1184
6 E A 0.3171
7 S A -0.1820
8 G A -0.6922
9 G A 0.0912
10 G A 0.6719
11 L A 1.3888
12 V A -0.1121
13 Q A -1.4489
14 P A -1.8165
15 G A -1.5401
16 G A -1.0139
17 S A -1.2738
18 L A -0.8536
19 R A -2.0636
20 L A 0.0000
21 S A -0.4067
22 C A 0.0000
23 A A -0.0983
24 A A 0.0000
25 S A -0.9975
26 G A -1.2836
27 L A -0.9334
28 P A -0.9032
29 E A -1.0980
30 P A -0.9201
31 S A -1.0467
32 I A 0.0000
33 A A -0.4832
34 V A 0.2469
35 Y A 0.0000
36 S A 0.0000
37 L A 0.0000
38 G A 0.0000
39 W A 0.0000
40 F A 0.0000
41 R A 0.0000
42 Q A -0.7120
43 A A -0.9759
44 P A -0.9823
45 G A -1.2749
46 Q A -1.8158
47 G A -1.1651
48 L A -0.4787
49 E A -1.0429
50 A A -0.5690
51 V A 0.0000
52 A A 0.0000
53 A A 0.0000
54 I A 0.0000
55 D A 0.0000
56 N A -1.0262
57 T A -1.4170
58 G A -2.0146
59 K A -2.8648
60 K A -2.8549
61 T A -1.3238
62 Y A -0.5919
63 Y A -0.7561
64 A A -1.3715
65 D A -2.4537
66 S A -1.7844
67 V A 0.0000
68 K A -2.5761
69 G A -1.7668
70 R A -1.5505
71 F A 0.0000
72 T A -0.8037
73 I A 0.0000
74 S A -0.6009
75 R A -1.1564
76 D A -1.8425
77 N A -1.9055
78 S A -1.7238
79 K A -2.4408
80 N A -1.7445
81 T A 0.0000
82 L A 0.0000
83 Y A -0.6521
84 L A 0.0000
85 Q A -1.2167
86 M A 0.0000
87 N A -1.5282
88 S A -1.4381
89 L A 0.0000
90 R A -2.9255
91 A A -2.0331
92 E A -2.4614
93 D A 0.0000
94 T A -0.5122
95 A A 0.0000
96 V A 0.8005
97 Y A 0.0000
98 Y A 0.3679
99 C A 0.0000
100 A A 0.0000
101 A A 0.0000
102 G A 0.0000
103 Y A 0.6930
104 N A -0.4200
105 P A -0.6696
106 G A -1.6798
107 E A -2.6896
108 P A 0.0000
109 A A 0.0000
110 T A -1.5860
111 E A -2.7299
112 P A -2.2349
113 E A -3.1989
114 D A -2.5364
115 Y A 0.0000
116 D A -1.8980
117 Y A -0.5054
118 W A -0.0312
119 G A -0.0519
120 Q A -0.8481
121 G A 0.0851
122 T A 0.6100
123 L A 1.6955
124 V A 0.0000
125 T A 0.3019
126 V A 0.0000
127 S A -0.7956
128 S A -0.5075
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018