| Chain sequence(s) |
A: RADARADARADARADA
C: RADARADARADARADA B: RADARADARADARADA E: RADARADARADARADA D: RADARADARADARADA G: RADARADARADARADA F: RADARADARADARADA I: RADARADARADARADA H: RADARADARADARADA K: RADARADARADARADA J: RADARADARADARADA M: RADARADARADARADA L: RADARADARADARADA O: RADARADARADARADA N: RADARADARADARADA P: RADARADARADARADA input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,P |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:25)
[INFO] Main: Simulation completed successfully. (00:05:30)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | A | -2.9720 | |
| 2 | A | A | -2.1740 | |
| 3 | D | A | -3.0169 | |
| 4 | A | A | -2.8471 | |
| 5 | R | A | -2.8590 | |
| 6 | A | A | -2.5618 | |
| 7 | D | A | -3.3416 | |
| 8 | A | A | -2.9283 | |
| 9 | R | A | -3.3006 | |
| 10 | A | A | -2.8918 | |
| 11 | D | A | -3.6592 | |
| 12 | A | A | -3.2913 | |
| 13 | R | A | -3.4422 | |
| 14 | A | A | -2.4640 | |
| 15 | D | A | -2.9191 | |
| 16 | A | A | -1.6515 | |
| 1 | R | B | -2.5530 | |
| 2 | A | B | -2.2058 | |
| 3 | D | B | -2.0477 | |
| 4 | A | B | -1.8711 | |
| 5 | R | B | -2.0156 | |
| 6 | A | B | 0.0000 | |
| 7 | D | B | -2.0931 | |
| 8 | A | B | -1.7129 | |
| 9 | R | B | -2.4463 | |
| 10 | A | B | 0.0000 | |
| 11 | D | B | -2.5266 | |
| 12 | A | B | -2.2998 | |
| 13 | R | B | -3.3090 | |
| 14 | A | B | -2.6655 | |
| 15 | D | B | -3.3156 | |
| 16 | A | B | -2.4295 | |
| 1 | R | C | -2.6065 | |
| 2 | A | C | -2.0762 | |
| 3 | D | C | -2.0084 | |
| 4 | A | C | -1.9399 | |
| 5 | R | C | -2.0775 | |
| 6 | A | C | 0.0000 | |
| 7 | D | C | -1.9357 | |
| 8 | A | C | -1.7276 | |
| 9 | R | C | -2.6154 | |
| 10 | A | C | 0.0000 | |
| 11 | D | C | -2.4928 | |
| 12 | A | C | -2.2922 | |
| 13 | R | C | -3.0929 | |
| 14 | A | C | -2.4727 | |
| 15 | D | C | -2.7849 | |
| 16 | A | C | -1.4690 | |
| 1 | R | D | -2.5683 | |
| 2 | A | D | -1.8188 | |
| 3 | D | D | -1.9907 | |
| 4 | A | D | -1.9174 | |
| 5 | R | D | -2.0705 | |
| 6 | A | D | 0.0000 | |
| 7 | D | D | -2.0037 | |
| 8 | A | D | -1.7445 | |
| 9 | R | D | -2.6385 | |
| 10 | A | D | 0.0000 | |
| 11 | D | D | -2.5056 | |
| 12 | A | D | -2.2795 | |
| 13 | R | D | -3.0972 | |
| 14 | A | D | -2.4940 | |
| 15 | D | D | -2.7804 | |
| 16 | A | D | -1.4847 | |
| 1 | R | E | -2.5603 | |
| 2 | A | E | -1.8021 | |
| 3 | D | E | -1.9980 | |
| 4 | A | E | -1.9046 | |
| 5 | R | E | -2.0351 | |
| 6 | A | E | 0.0000 | |
| 7 | D | E | -1.9636 | |
| 8 | A | E | -1.6863 | |
| 9 | R | E | -2.5695 | |
| 10 | A | E | 0.0000 | |
| 11 | D | E | -2.4222 | |
| 12 | A | E | -2.2261 | |
| 13 | R | E | -3.0484 | |
| 14 | A | E | -2.4440 | |
| 15 | D | E | -2.7538 | |
| 16 | A | E | -1.4614 | |
| 1 | R | F | -2.5721 | |
| 2 | A | F | -1.7900 | |
| 3 | D | F | -1.9566 | |
| 4 | A | F | -1.9192 | |
| 5 | R | F | -2.0374 | |
| 6 | A | F | 0.0000 | |
| 7 | D | F | -1.9144 | |
| 8 | A | F | -1.6409 | |
| 9 | R | F | -2.4945 | |
| 10 | A | F | 0.0000 | |
| 11 | D | F | -2.3606 | |
| 12 | A | F | -2.1756 | |
| 13 | R | F | -3.0125 | |
| 14 | A | F | -2.4186 | |
| 15 | D | F | -2.7324 | |
| 16 | A | F | -1.4586 | |
| 1 | R | G | -2.5861 | |
| 2 | A | G | -1.7848 | |
| 3 | D | G | -1.9792 | |
| 4 | A | G | -1.9259 | |
| 5 | R | G | -2.0473 | |
| 6 | A | G | 0.0000 | |
| 7 | D | G | -1.9402 | |
| 8 | A | G | -1.6674 | |
| 9 | R | G | -2.5290 | |
| 10 | A | G | 0.0000 | |
| 11 | D | G | -2.4075 | |
| 12 | A | G | -2.2217 | |
| 13 | R | G | -3.0379 | |
| 14 | A | G | -2.4658 | |
| 15 | D | G | -2.7563 | |
| 16 | A | G | -1.4836 | |
| 1 | R | H | -2.5645 | |
| 2 | A | H | -1.7910 | |
| 3 | D | H | -1.9340 | |
| 4 | A | H | -1.9106 | |
| 5 | R | H | -2.0439 | |
| 6 | A | H | 0.0000 | |
| 7 | D | H | -1.9364 | |
| 8 | A | H | -1.7612 | |
| 9 | R | H | -2.5076 | |
| 10 | A | H | 0.0000 | |
| 11 | D | H | -2.3730 | |
| 12 | A | H | -2.1892 | |
| 13 | R | H | -3.0212 | |
| 14 | A | H | -2.4572 | |
| 15 | D | H | -2.7529 | |
| 16 | A | H | -1.4717 | |
| 1 | R | I | -2.5433 | |
| 2 | A | I | -1.7328 | |
| 3 | D | I | -1.8784 | |
| 4 | A | I | -1.8556 | |
| 5 | R | I | -1.9992 | |
| 6 | A | I | 0.0000 | |
| 7 | D | I | -1.9351 | |
| 8 | A | I | -1.6402 | |
| 9 | R | I | -2.5416 | |
| 10 | A | I | 0.0000 | |
| 11 | D | I | -2.4129 | |
| 12 | A | I | -2.2215 | |
| 13 | R | I | -3.0399 | |
| 14 | A | I | -2.4544 | |
| 15 | D | I | -2.7549 | |
| 16 | A | I | -1.4818 | |
| 1 | R | J | -2.5662 | |
| 2 | A | J | -1.8114 | |
| 3 | D | J | -1.9220 | |
| 4 | A | J | -1.8544 | |
| 5 | R | J | -1.9824 | |
| 6 | A | J | 0.0000 | |
| 7 | D | J | -1.8687 | |
| 8 | A | J | -1.5707 | |
| 9 | R | J | -2.3588 | |
| 10 | A | J | 0.0000 | |
| 11 | D | J | -2.3279 | |
| 12 | A | J | -2.1546 | |
| 13 | R | J | -2.9990 | |
| 14 | A | J | -2.4099 | |
| 15 | D | J | -2.7244 | |
| 16 | A | J | -1.4715 | |
| 1 | R | K | -2.6117 | |
| 2 | A | K | -1.8207 | |
| 3 | D | K | -1.9683 | |
| 4 | A | K | -1.9117 | |
| 5 | R | K | -1.9945 | |
| 6 | A | K | 0.0000 | |
| 7 | D | K | -1.8950 | |
| 8 | A | K | -1.7515 | |
| 9 | R | K | -2.4696 | |
| 10 | A | K | 0.0000 | |
| 11 | D | K | -2.4150 | |
| 12 | A | K | -2.2197 | |
| 13 | R | K | -3.0491 | |
| 14 | A | K | -2.4299 | |
| 15 | D | K | -2.7561 | |
| 16 | A | K | -1.4967 | |
| 1 | R | L | -2.6373 | |
| 2 | A | L | -2.1073 | |
| 3 | D | L | -2.0218 | |
| 4 | A | L | -1.9232 | |
| 5 | R | L | -2.1425 | |
| 6 | A | L | 0.0000 | |
| 7 | D | L | -1.9428 | |
| 8 | A | L | -1.6807 | |
| 9 | R | L | -2.5350 | |
| 10 | A | L | 0.0000 | |
| 11 | D | L | -2.4520 | |
| 12 | A | L | -2.2268 | |
| 13 | R | L | -3.0781 | |
| 14 | A | L | -2.4694 | |
| 15 | D | L | -2.7697 | |
| 16 | A | L | -1.4930 | |
| 1 | R | M | -2.5701 | |
| 2 | A | M | -1.9780 | |
| 3 | D | M | -1.9129 | |
| 4 | A | M | -1.8521 | |
| 5 | R | M | -2.0897 | |
| 6 | A | M | 0.0000 | |
| 7 | D | M | -1.7056 | |
| 8 | A | M | -1.5605 | |
| 9 | R | M | -2.3287 | |
| 10 | A | M | 0.0000 | |
| 11 | D | M | -2.4762 | |
| 12 | A | M | -2.1845 | |
| 13 | R | M | -3.1190 | |
| 14 | A | M | -2.4820 | |
| 15 | D | M | -2.7702 | |
| 16 | A | M | -1.4754 | |
| 1 | R | N | -2.4877 | |
| 2 | A | N | -1.7245 | |
| 3 | D | N | -1.8802 | |
| 4 | A | N | -1.7255 | |
| 5 | R | N | -1.9950 | |
| 6 | A | N | 0.0000 | |
| 7 | D | N | -1.8127 | |
| 8 | A | N | -1.6084 | |
| 9 | R | N | -2.2290 | |
| 10 | A | N | 0.0000 | |
| 11 | D | N | -2.3628 | |
| 12 | A | N | -2.1903 | |
| 13 | R | N | -3.1496 | |
| 14 | A | N | -2.4680 | |
| 15 | D | N | -2.7558 | |
| 16 | A | N | -1.4936 | |
| 1 | R | O | -2.5306 | |
| 2 | A | O | -2.1632 | |
| 3 | D | O | -2.4569 | |
| 4 | A | O | -2.2259 | |
| 5 | R | O | -3.1133 | |
| 6 | A | O | -2.6950 | |
| 7 | D | O | -2.4521 | |
| 8 | A | O | -2.6172 | |
| 9 | R | O | -3.4645 | |
| 10 | A | O | -3.4670 | |
| 11 | D | O | -3.7690 | |
| 12 | A | O | -2.9948 | |
| 13 | R | O | -3.5770 | |
| 14 | A | O | -2.9774 | |
| 15 | D | O | -2.7767 | |
| 16 | A | O | -1.6127 | |
| 1 | R | P | -3.2620 | |
| 2 | A | P | -2.7664 | |
| 3 | D | P | -3.4231 | |
| 4 | A | P | -2.9378 | |
| 5 | R | P | -3.7004 | |
| 6 | A | P | -3.2663 | |
| 7 | D | P | -3.6231 | |
| 8 | A | P | -3.2264 | |
| 9 | R | P | -3.7517 | |
| 10 | A | P | -3.3055 | |
| 11 | D | P | -3.6997 | |
| 12 | A | P | -3.0710 | |
| 13 | R | P | -3.3355 | |
| 14 | A | P | -2.4985 | |
| 15 | D | P | -2.7731 | |
| 16 | A | P | -1.6731 |