Project name: 70f920978dfd9ff

Status: done

Started: 2025-02-11 18:58:39
Settings
Chain sequence(s) H: QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYTMHWVRQAPGKGLEWVTFISYDGNNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARTGWLGPFDYWGQGTLVTVSSASTKGPSVFPLAPSSTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP
L: EIVLTQSPGTLSLSPGERATLSCRASQSVGSSYLAWYQQKPGQAPRLLIYGAFSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:27)
Show buried residues

Minimal score value
-3.7167
Maximal score value
2.1535
Average score
-0.6763
Total score value
-286.7691

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5604
2 V H -0.9402
3 Q H -1.0600
4 L H 0.0000
5 V H 1.1322
6 E H 0.0000
7 S H -0.3479
8 G H -0.9413
9 G H -0.3938
10 G H 0.0337
11 V H 0.6010
12 V H -0.5180
13 Q H -1.3069
14 P H -1.9725
15 G H -2.1664
16 R H -2.6010
17 S H -1.9565
18 L H -1.3695
19 R H -2.0824
20 L H 0.0000
21 S H -0.4208
22 C H 0.0000
23 A H -0.0153
24 A H 0.0000
25 S H -0.7356
26 G H -1.1659
27 F H -0.4586
28 T H -0.1661
29 F H 0.0000
30 S H -0.4794
31 S H 0.1198
32 Y H 0.4285
33 T H 0.3237
34 M H 0.0000
35 H H 0.0000
36 W H 0.0000
37 V H 0.0000
38 R H 0.0000
39 Q H 0.0000
40 A H -0.9583
41 P H -0.7874
42 G H -1.4636
43 K H -2.3390
44 G H -1.5682
45 L H 0.0000
46 E H -1.1433
47 W H 0.0000
48 V H 0.0000
49 T H 0.0000
50 F H 0.0898
51 I H 0.0000
52 S H -0.8285
53 Y H -0.3523
54 D H -2.0504
55 G H -1.9770
56 N H -2.4266
57 N H -2.2015
58 K H -1.0679
59 Y H -0.1658
60 Y H -0.6459
61 A H -1.2997
62 D H -2.4718
63 S H -1.9072
64 V H 0.0000
65 K H -2.5560
66 G H -1.7945
67 R H -1.5389
68 F H 0.0000
69 T H -0.8062
70 I H 0.0000
71 S H -0.5938
72 R H -0.9869
73 D H -1.6524
74 N H -1.6692
75 S H -1.5065
76 K H -2.2685
77 N H -1.5876
78 T H 0.0000
79 L H 0.0000
80 Y H -0.5115
81 L H 0.0000
82 Q H -1.1919
83 M H 0.0000
84 N H -1.8595
85 S H -1.7810
86 L H 0.0000
87 R H -3.0185
88 A H -1.8976
89 E H -2.4581
90 D H 0.0000
91 T H -0.5531
92 A H 0.0000
93 I H 0.6182
94 Y H 0.0000
95 Y H 0.0000
96 C H 0.0000
97 A H 0.0000
98 R H 0.0000
99 T H 0.6144
100 G H 1.0982
101 W H 1.8666
102 L H 2.1535
103 G H 1.1258
104 P H 0.0000
105 F H 0.0000
106 D H 0.1514
107 Y H 0.0902
108 W H -0.0821
109 G H 0.0000
110 Q H -1.1316
111 G H -0.2942
112 T H 0.0000
113 L H 0.9429
114 V H 0.0000
115 T H -0.1211
116 V H 0.0000
117 S H -0.7070
118 S H -0.5922
119 A H -0.3196
120 S H -0.4184
121 T H -0.6922
122 K H -1.1642
123 G H -1.4725
124 P H 0.0000
125 S H -0.5481
126 V H 0.0000
127 F H 0.0000
128 P H -1.2396
129 L H 0.0000
130 A H -0.8586
131 P H 0.0000
132 S H -0.5202
133 S H -0.3821
140 T H -0.2937
141 A H 0.0000
142 A H 0.0000
143 L H 0.0000
144 G H 0.0000
145 C H 0.0000
146 L H 0.0000
147 V H 0.0000
148 K H 0.0000
149 D H -0.7374
150 Y H 0.0000
151 F H 0.0000
152 P H -0.8575
153 E H -0.8806
154 P H -1.0425
155 V H -0.8077
156 T H -0.6046
157 V H -0.1773
158 S H -0.3567
159 W H 0.0000
160 N H -0.7746
161 S H -0.6340
162 G H -0.4239
163 A H -0.2043
164 L H -0.0223
165 T H -0.1578
166 S H -0.1961
167 G H -0.2239
168 V H 0.1613
169 H H -0.2393
170 T H 0.0657
171 F H 0.0000
172 P H -0.3981
173 A H 0.0373
174 V H 0.3731
175 L H 1.0332
176 Q H 0.2219
177 S H -0.0677
178 S H -0.2515
179 G H -0.0544
180 L H -0.1330
181 Y H 0.0000
182 S H 0.0000
183 L H 0.0000
184 S H 0.0000
185 S H 0.0000
186 V H 0.0000
187 V H 0.0000
188 T H -0.1507
189 V H 0.0000
190 P H -0.3800
191 S H -0.4436
192 S H -0.5389
193 S H -0.6022
194 L H -0.8876
195 G H -1.1295
196 T H -0.7278
197 Q H -1.2323
198 T H -1.1975
199 Y H 0.0000
200 I H -1.3113
201 C H 0.0000
202 N H -1.4416
203 V H 0.0000
204 N H -2.0115
205 H H 0.0000
206 K H -2.9006
207 P H -1.7312
208 S H -1.8696
209 N H -2.7287
210 T H -2.1272
211 K H -2.6900
212 V H -1.4655
213 D H -2.5616
214 K H -1.9873
215 R H -2.7094
216 V H 0.0000
217 E H -2.5566
218 P H -1.2647
1 E L -1.4712
2 I L -0.4046
3 V L 0.7851
4 L L 0.0000
5 T L -0.7033
6 Q L 0.0000
7 S L -0.8723
8 P L -0.6510
9 G L -0.9178
10 T L -0.4823
11 L L -0.2689
12 S L -0.5692
13 L L -1.0173
14 S L -1.5939
15 P L -2.0687
16 G L -2.4532
17 E L -3.0023
18 R L -3.2842
19 A L 0.0000
20 T L -0.6205
21 L L 0.0000
22 S L -0.7913
23 C L 0.0000
24 R L -2.0291
25 A L 0.0000
26 S L -0.9246
27 Q L -1.5801
28 S L -1.2854
29 V L 0.0000
30 G L -0.5722
31 S L 0.0125
32 S L 0.4583
33 Y L 0.7585
34 L L 0.0000
35 A L 0.0000
36 W L 0.0000
37 Y L 0.0000
38 Q L 0.0000
39 Q L 0.0000
40 K L -1.4091
41 P L -1.3075
42 G L -1.4128
43 Q L -2.0644
44 A L -1.3424
45 P L 0.0000
46 R L -1.3618
47 L L 0.0000
48 L L 0.0000
49 I L 0.0000
50 Y L 0.6913
51 G L 0.7501
52 A L 0.0000
53 F L 1.3343
54 S L 0.3391
55 R L -0.6795
56 A L -0.4608
57 T L -0.4799
58 G L -0.7473
59 I L -0.8740
60 P L -1.2007
61 D L -2.1123
62 R L -1.9545
63 F L 0.0000
64 S L -0.3207
65 G L 0.3532
66 S L 0.0114
67 G L -0.6477
68 S L -0.8537
69 G L -1.2130
70 T L -1.6849
71 D L -2.0539
72 F L 0.0000
73 T L -0.4739
74 L L 0.0000
75 T L -0.8048
76 I L 0.0000
77 S L -2.4563
78 R L -3.4647
79 L L 0.0000
80 E L -2.6345
81 P L -1.8031
82 E L -2.2520
83 D L 0.0000
84 F L -0.6707
85 A L 0.0000
86 V L -0.2751
87 Y L 0.0000
88 Y L 0.0000
89 C L 0.0000
90 Q L 0.0000
91 Q L 0.0000
92 Y L 0.0000
93 G L -0.1386
94 S L -0.4816
95 S L -0.4395
96 P L -0.4817
97 W L -0.1076
98 T L -0.0689
99 F L 0.0466
100 G L 0.0000
101 Q L -1.4839
102 G L -1.1585
103 T L 0.0000
104 K L -0.7940
105 V L 0.0000
106 E L 0.0000
107 I L -0.7320
108 K L -1.6082
109 R L -1.1935
110 T L -0.1829
111 V L 0.4582
112 A L 0.0838
113 A L -0.1210
114 P L 0.0000
115 S L -0.1699
116 V L 0.0000
117 F L 0.0702
118 I L 0.0672
119 F L 0.0000
120 P L -0.7364
121 P L -0.9866
122 S L -1.7101
123 D L -3.0603
124 E L -3.2306
125 Q L 0.0000
126 L L -2.3619
127 K L -2.9470
128 S L -1.8442
129 G L -1.3015
130 T L -0.9360
131 A L 0.0000
132 S L 0.0000
133 V L 0.0000
134 V L 0.0000
135 C L 0.0000
136 L L 0.0000
137 L L 0.0000
138 N L 0.0000
139 N L -0.7633
140 F L 0.0000
141 Y L 0.0000
142 P L -1.2522
143 R L -1.8270
144 E L -2.6746
145 A L -2.0384
146 K L -2.2840
147 V L -1.0142
148 Q L -0.4764
149 W L 0.0000
150 K L -0.4698
151 V L 0.0000
152 D L -1.6160
153 N L -1.3782
154 A L -0.1320
155 L L 0.7966
156 Q L -0.0740
157 S L -0.4073
158 G L -0.8747
159 N L -0.7785
160 S L -1.0802
161 Q L -1.3183
162 E L -1.8765
163 S L -0.8985
164 V L -0.4053
165 T L -0.8913
166 E L -2.0100
167 Q L -1.5701
168 D L -1.7465
169 S L -1.6420
170 K L -2.2655
171 D L -1.8122
172 S L 0.0000
173 T L 0.0000
174 Y L 0.0000
175 S L 0.0000
176 L L 0.0000
177 S L 0.0000
178 S L 0.0000
179 T L -0.6230
180 L L 0.0000
181 T L -0.2826
182 L L -0.7616
183 S L -1.1685
184 K L -2.1380
185 A L -1.9741
186 D L -2.8392
187 Y L 0.0000
188 E L -3.7167
189 K L -3.6094
190 H L -3.2863
191 K L -3.4070
192 V L -1.6881
193 Y L 0.0000
194 A L 0.0000
195 C L 0.0000
196 E L -0.5599
197 V L 0.0000
198 T L -1.1194
199 H L 0.0000
200 Q L -1.6519
201 G L -0.4284
202 L L -0.2510
203 S L -0.4751
204 S L -0.4174
205 P L -0.4707
206 V L 0.0426
207 T L -0.4221
208 K L -0.6729
209 S L -0.6088
210 F L -1.1488
211 N L -2.5888
212 R L -3.0939
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Laboratory of Theory of Biopolymers 2018