Project name: query_structure

Status: done

Started: 2026-03-16 23:25:16
Settings
Chain sequence(s) A: GKYTCGETCFKGKCYTPGCTCSYPICKKD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:37)
Show buried residues

Minimal score value
-2.7095
Maximal score value
1.4727
Average score
-0.3712
Total score value
-10.766

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.0112
2 K A -2.0806
3 Y A -0.3235
4 T A -0.7902
5 C A -0.4862
6 G A -0.4913
7 E A 0.1302
8 T A 0.3578
9 C A 0.0000
10 F A 1.0469
11 K A -1.1524
12 G A -1.0092
13 K A -1.3254
14 C A -0.1327
15 Y A 0.8720
16 T A 0.0564
17 P A -0.1782
18 G A -0.9209
19 C A -0.9589
20 T A -0.5163
21 C A 0.5170
22 S A 0.9077
23 Y A 1.4727
24 P A 1.1403
25 I A 1.0424
26 C A 0.0000
27 K A -1.1017
28 K A -2.1212
29 D A -2.7095
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Laboratory of Theory of Biopolymers 2018