Project name: obj1 [mutate: IC93C, GV113C, LS115C, TR117C, YF59C]

Status: done

Started: 2025-02-10 13:45:00
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Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues IC93C,TR117C,LS115C,GV113C,YF59C
Energy difference between WT (input) and mutated protein (by FoldX) 7.71739 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:24)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:43)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:07)
Show buried residues

Minimal score value
-3.328
Maximal score value
1.5458
Average score
-0.7655
Total score value
-91.8655

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0063
2 V C -0.9175
3 Q C -1.2456
4 L C 0.0000
5 V C 0.6538
6 E C 0.1585
7 S C -0.5523
8 G C -1.0734
9 G C -0.8230
10 G C -0.1096
11 L C 0.5380
12 V C -0.4840
13 Q C -1.5823
14 P C -1.6582
15 G C -1.4159
16 G C -0.9828
17 S C -1.2339
18 L C -0.9720
19 R C -2.1462
20 L C 0.0000
21 S C -0.5418
22 C C 0.0000
23 A C -0.2017
24 A C 0.0000
25 S C -0.2017
26 D C 0.0000
27 F C 1.5458
28 T C 0.2524
29 F C 0.0000
30 R C -2.0330
31 S C -0.8870
32 Y C -1.2169
33 E C -1.1436
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.7385
40 A C -1.5089
41 P C -1.3764
42 G C -1.4636
43 K C -2.1869
44 G C -1.1467
45 L C 0.1873
46 E C -0.4679
47 W C 0.3034
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5509
53 G C -1.2475
54 S C -1.2308
55 G C -1.0849
56 G C -0.7391
57 S C -0.2549
58 T C 0.3208
59 F C 0.8703 mutated: YF59C
60 Y C -0.2299
61 A C -1.0830
62 D C -2.3163
63 S C -1.7159
64 V C 0.0000
65 K C -2.3488
66 G C -1.6176
67 R C 0.0000
68 F C 0.0000
69 T C -0.6427
70 I C 0.0000
71 S C -0.5634
72 R C -1.3627
73 D C -1.9805
74 N C -2.1902
75 S C -1.7905
76 K C -2.3163
77 N C -1.6491
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6696
81 L C 0.0000
82 Q C -1.2337
83 M C 0.0000
84 N C -1.3327
85 S C -1.2322
86 L C 0.0000
87 R C -2.6624
88 A C -2.1989
89 E C -2.5499
90 D C 0.0000
91 T C -1.4927
92 A C 0.0000
93 C C -0.2373 mutated: IC93C
94 Y C 0.0000
95 Y C 0.4846
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.1872
101 D C -3.3280
102 G C -2.0746
103 F C -1.1755
104 N C -2.4172
105 K C -3.1784
106 G C -1.9029
107 F C -0.9845
108 D C -1.1011
109 Y C -0.2141
110 W C 0.6252
111 G C 0.0796
112 Q C -0.6938
113 V C 0.0622 mutated: GV113C
114 T C -0.1708
115 S C -0.4811 mutated: LS115C
116 V C 0.0000
117 R C -1.8289 mutated: TR117C
118 V C 0.0000
119 S C -1.1432
120 S C -1.2241
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Laboratory of Theory of Biopolymers 2018