Project name: 71283995fb50a1b

Status: done

Started: 2025-02-11 02:20:27
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Chain sequence(s) H: AQQLKESGGGLVKPGTPLTLTCTVSGIDLNNNAMSWVRQAPGEGLEWIGTISIGHTTYYSSWAKGRFTISKTSTTVDLEMTSLTASDTATYFCATRYGGGNAMGWFDLWGQGTLVTVSS
L: SFVLTQPASVQVNLGQTVSLTCTADILSKEYVSWYQQKPGQAPVLLIHRDTSRPSGVPDRFSGSSSGNTATLTISGAQAGDEADYYCATDDNTNSNYQYVFGGGTQLTVT
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:08)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:08)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:08)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:08)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:08)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:46)
Show buried residues

Minimal score value
-2.3528
Maximal score value
1.5122
Average score
-0.5178
Total score value
-118.5785

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A H -0.7740
2 Q H -1.6001
3 Q H -2.0804
4 L H 0.0000
5 K H -2.2712
6 E H 0.0000
7 S H -0.7962
8 G H -0.4696
9 G H 0.2445
11 G H 0.5883
12 L H 1.2526
13 V H 0.0000
14 K H -1.3741
15 P H -1.0743
16 G H -1.0372
17 T H -0.8612
18 P H -0.8146
19 L H -0.3897
20 T H -0.6796
21 L H 0.0000
22 T H -0.8053
23 C H 0.0000
24 T H -0.8647
25 V H -0.9573
26 S H -1.2309
27 G H -1.1736
28 I H -1.2681
29 D H -1.7896
30 L H 0.0000
35 N H -2.1806
36 N H -1.9128
37 N H -1.1149
38 A H 0.0000
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.8043
45 A H -0.9209
46 P H -0.9098
47 G H -1.5259
48 E H -2.3528
49 G H -1.5018
50 L H 0.0000
51 E H -0.9596
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 T H 0.0000
56 I H 0.0000
57 S H -0.4109
58 I H -0.6039
59 G H -0.9772
63 H H -1.1631
64 T H -0.4297
65 T H -0.0701
66 Y H 0.1535
67 Y H -0.0362
68 S H 0.0000
69 S H -0.4427
70 W H -0.1569
71 A H 0.0000
72 K H -1.3663
74 G H -1.2148
75 R H -1.1788
76 F H 0.0000
77 T H -0.8464
78 I H 0.0000
79 S H -0.8022
80 K H -0.5765
81 T H -0.4988
84 S H -0.6817
85 T H -0.4550
86 T H -0.4546
87 V H 0.0000
88 D H -0.8004
89 L H 0.0000
90 E H -1.2868
91 M H 0.0000
92 T H -0.7702
93 S H -0.7834
94 L H 0.0000
95 T H -0.5995
96 A H -0.4040
97 S H -0.2278
98 D H 0.0000
99 T H 0.2767
100 A H 0.0000
101 T H 0.3734
102 Y H 0.0000
103 F H 0.0000
104 C H 0.0000
105 A H 0.0000
106 T H 0.0000
107 R H 0.0380
108 Y H 0.3082
109 G H -0.6692
110 G H -0.7526
111 G H -1.0893
111A N H -1.5231
112A A H -0.6609
112 M H -0.1996
113 G H 0.0000
114 W H 0.0000
115 F H 0.0000
116 D H 0.0022
117 L H -0.0145
118 W H 0.0000
119 G H 0.0000
120 Q H -1.8487
121 G H -0.8534
122 T H -0.0016
123 L H 1.3688
124 V H 0.0000
125 T H 0.5159
126 V H 0.0000
127 S H -0.3909
128 S H -0.6422
1 S L 0.2713
2 F L 0.0000
3 V L 1.4312
4 L L 0.0000
5 T L -0.0103
6 Q L -0.1935
7 P L -0.3994
8 A L -0.5028
9 S L -0.8401
11 V L -0.6277
12 Q L -1.4124
13 V L 0.0000
14 N L -1.1335
15 L L 0.1318
16 G L -0.7841
17 Q L -1.2116
18 T L -0.8612
19 V L 0.0000
20 S L -0.2332
21 L L 0.0000
22 T L -0.2088
23 C L 0.0000
24 T L -0.5270
25 A L -0.7532
26 D L -2.0969
27 I L -1.3268
28 L L 0.0000
29 S L -1.8093
36 K L -2.2095
37 E L -1.1472
38 Y L 0.4274
39 V L 0.0000
40 S L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.1464
44 Q L 0.0000
45 K L -1.2516
46 P L -1.2368
47 G L -1.3426
48 Q L -1.5148
49 A L -0.6254
50 P L 0.0000
51 V L 1.5122
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 H L 0.0000
56 R L -0.5683
57 D L 0.0000
65 T L -0.4901
66 S L -0.7526
67 R L -1.4002
68 P L -0.7290
69 S L -0.8091
70 G L -0.8681
71 V L -0.6451
72 P L -1.3087
74 D L -2.2202
75 R L -1.4382
76 F L 0.0000
77 S L -0.8138
78 G L 0.0000
79 S L -0.4918
80 S L -0.4874
83 S L -0.7881
84 G L -1.5070
85 N L -1.9803
86 T L -0.9976
87 A L 0.0000
88 T L -0.2629
89 L L 0.0000
90 T L -0.2995
91 I L 0.0000
92 S L -1.0971
93 G L -0.9644
94 A L 0.0000
95 Q L -1.3258
96 A L -0.7663
97 G L -1.1212
98 D L 0.0000
99 E L -1.9696
100 A L 0.0000
101 D L -1.4345
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 A L 0.0000
106 T L 0.0000
107 D L 0.0000
108 D L 0.0000
109 N L -1.9910
110 T L -1.4402
111 N L -1.9206
112 S L -1.2758
113 N L -1.0932
114 Y L -0.8049
115 Q L 0.0000
116 Y L 0.0000
117 V L 0.4326
118 F L 0.0000
119 G L 0.0000
120 G L -0.8252
121 G L 0.0000
122 T L 0.0000
123 Q L -1.7589
124 L L 0.0000
125 T L -1.0325
126 V L -0.8474
127 T L -0.5954
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Laboratory of Theory of Biopolymers 2018