| Chain sequence(s) |
A: SECRYLFGGCKTTADCCKHLGCRTDLYYCAWDGTF
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:18)
[INFO] Main: Simulation completed successfully. (00:00:19)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | S | A | -1.2467 | |
| 2 | E | A | -2.1848 | |
| 3 | C | A | -1.8296 | |
| 4 | R | A | -1.1309 | |
| 5 | Y | A | 1.2893 | |
| 6 | L | A | 2.2798 | |
| 7 | F | A | 2.8131 | |
| 8 | G | A | 0.6172 | |
| 9 | G | A | 0.1053 | |
| 10 | C | A | 0.0000 | |
| 11 | K | A | -2.0094 | |
| 12 | T | A | -1.3945 | |
| 13 | T | A | -1.1574 | |
| 14 | A | A | -1.0158 | |
| 15 | D | A | -2.3518 | |
| 16 | C | A | 0.0000 | |
| 17 | C | A | -1.5682 | |
| 18 | K | A | -2.1034 | |
| 19 | H | A | -1.6841 | |
| 20 | L | A | 0.0000 | |
| 21 | G | A | -0.6649 | |
| 22 | C | A | 0.0000 | |
| 23 | R | A | -1.1077 | |
| 24 | T | A | -1.0703 | |
| 25 | D | A | -1.3110 | |
| 26 | L | A | 0.7219 | |
| 27 | Y | A | 0.3261 | |
| 28 | Y | A | 0.7167 | |
| 29 | C | A | 0.0000 | |
| 30 | A | A | 0.0000 | |
| 31 | W | A | 0.1169 | |
| 32 | D | A | -1.4399 | |
| 33 | G | A | -1.1745 | |
| 34 | T | A | -0.0411 | |
| 35 | F | A | 1.2425 |