Project name: query_structure

Status: done

Started: 2026-03-16 20:08:35
Settings
Chain sequence(s) A: SECRYLFGGCKTTADCCKHLGCRTDLYYCAWDGTF
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:19)
Show buried residues

Minimal score value
-2.3518
Maximal score value
2.8131
Average score
-0.4645
Total score value
-16.2572

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -1.2467
2 E A -2.1848
3 C A -1.8296
4 R A -1.1309
5 Y A 1.2893
6 L A 2.2798
7 F A 2.8131
8 G A 0.6172
9 G A 0.1053
10 C A 0.0000
11 K A -2.0094
12 T A -1.3945
13 T A -1.1574
14 A A -1.0158
15 D A -2.3518
16 C A 0.0000
17 C A -1.5682
18 K A -2.1034
19 H A -1.6841
20 L A 0.0000
21 G A -0.6649
22 C A 0.0000
23 R A -1.1077
24 T A -1.0703
25 D A -1.3110
26 L A 0.7219
27 Y A 0.3261
28 Y A 0.7167
29 C A 0.0000
30 A A 0.0000
31 W A 0.1169
32 D A -1.4399
33 G A -1.1745
34 T A -0.0411
35 F A 1.2425
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Laboratory of Theory of Biopolymers 2018