| Chain sequence(s) |
A: MEFGLSWVFLAAILKGVQCEVQLVESGGGLVQPGGSLRLSCAASGFTFSNSDMNWVHQAPGKGLEWVSGVSWNGSRTHYADSVKGRFIISRDNSRNTLYLQTNSLRAEDTAVYYCVR
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:05)
[INFO] Main: Simulation completed successfully. (00:01:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | M | A | 0.6105 | |
| 2 | E | A | -0.2477 | |
| 3 | F | A | 1.6329 | |
| 4 | G | A | 1.3280 | |
| 5 | L | A | 2.4810 | |
| 6 | S | A | 2.4541 | |
| 7 | W | A | 3.5982 | |
| 8 | V | A | 4.0274 | |
| 9 | F | A | 4.4628 | |
| 10 | L | A | 4.1021 | |
| 11 | A | A | 2.8524 | |
| 12 | A | A | 2.5422 | |
| 13 | I | A | 3.1272 | |
| 14 | L | A | 2.1213 | |
| 15 | K | A | -0.3638 | |
| 16 | G | A | 0.0004 | |
| 17 | V | A | 0.9862 | |
| 18 | Q | A | -0.7872 | |
| 19 | C | A | -0.2880 | |
| 20 | E | A | -1.4505 | |
| 21 | V | A | -0.5612 | |
| 22 | Q | A | -0.4539 | |
| 23 | L | A | 0.3940 | |
| 24 | V | A | 1.3759 | |
| 25 | E | A | 0.2247 | |
| 26 | S | A | -0.6554 | |
| 27 | G | A | -1.3989 | |
| 28 | G | A | -0.6844 | |
| 29 | G | A | -0.0709 | |
| 30 | L | A | 1.1806 | |
| 31 | V | A | 0.1526 | |
| 32 | Q | A | -1.1320 | |
| 33 | P | A | -1.2924 | |
| 34 | G | A | -1.3533 | |
| 35 | G | A | -0.7823 | |
| 36 | S | A | -1.0292 | |
| 37 | L | A | -0.7953 | |
| 38 | R | A | -1.9955 | |
| 39 | L | A | 0.0000 | |
| 40 | S | A | -0.5183 | |
| 41 | C | A | 0.0000 | |
| 42 | A | A | -0.1581 | |
| 43 | A | A | 0.0000 | |
| 44 | S | A | -0.4690 | |
| 45 | G | A | -0.5386 | |
| 46 | F | A | -0.1717 | |
| 47 | T | A | -0.3928 | |
| 48 | F | A | 0.0000 | |
| 49 | S | A | -1.5753 | |
| 50 | N | A | -1.5969 | |
| 51 | S | A | -1.6169 | |
| 52 | D | A | -2.2373 | |
| 53 | M | A | 0.0000 | |
| 54 | N | A | -0.7307 | |
| 55 | W | A | 0.0000 | |
| 56 | V | A | 0.0000 | |
| 57 | H | A | 0.1772 | |
| 58 | Q | A | -0.3336 | |
| 59 | A | A | -1.0258 | |
| 60 | P | A | -0.9524 | |
| 61 | G | A | -1.5758 | |
| 62 | K | A | -2.2690 | |
| 63 | G | A | -1.1996 | |
| 64 | L | A | 0.3132 | |
| 65 | E | A | -1.1661 | |
| 66 | W | A | 0.1077 | |
| 67 | V | A | 0.0000 | |
| 68 | S | A | 0.0000 | |
| 69 | G | A | -0.8987 | |
| 70 | V | A | 0.0000 | |
| 71 | S | A | 0.0000 | |
| 72 | W | A | -1.4227 | |
| 73 | N | A | -1.9199 | |
| 74 | G | A | -1.6557 | |
| 75 | S | A | -1.4413 | |
| 76 | R | A | -2.4821 | |
| 77 | T | A | -1.4966 | |
| 78 | H | A | -1.6651 | |
| 79 | Y | A | -1.1496 | |
| 80 | A | A | -1.6442 | |
| 81 | D | A | -2.6245 | |
| 82 | S | A | -1.8135 | |
| 83 | V | A | 0.0000 | |
| 84 | K | A | -2.5828 | |
| 85 | G | A | -1.5030 | |
| 86 | R | A | -1.1443 | |
| 87 | F | A | 0.0000 | |
| 88 | I | A | 0.2624 | |
| 89 | I | A | 0.0000 | |
| 90 | S | A | -0.1681 | |
| 91 | R | A | -1.3715 | |
| 92 | D | A | -2.0832 | |
| 93 | N | A | -2.2438 | |
| 94 | S | A | -1.8380 | |
| 95 | R | A | -2.6798 | |
| 96 | N | A | -1.9139 | |
| 97 | T | A | 0.0000 | |
| 98 | L | A | 0.0000 | |
| 99 | Y | A | -0.5722 | |
| 100 | L | A | 0.0000 | |
| 101 | Q | A | -0.7670 | |
| 102 | T | A | 0.0000 | |
| 103 | N | A | -1.0012 | |
| 104 | S | A | -1.1358 | |
| 105 | L | A | 0.0000 | |
| 106 | R | A | -2.3550 | |
| 107 | A | A | -1.7156 | |
| 108 | E | A | -2.2858 | |
| 109 | D | A | 0.0000 | |
| 110 | T | A | -0.4384 | |
| 111 | A | A | 0.1898 | |
| 112 | V | A | 1.6236 | |
| 113 | Y | A | 0.9886 | |
| 114 | Y | A | 1.4378 | |
| 115 | C | A | 0.0000 | |
| 116 | V | A | -0.2688 | |
| 117 | R | A | -1.8644 |