| Chain sequence(s) |
H: QVQLVQSGGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPEDTAVYYCARGFLPWFADWGQGTLVTVSS
L: DIQMTQSPSTLSASVGDRVTITCKASENVDTYVSWYQQKPGKAPKLLIYGASNRYTGVPSRFSGSGSGTDFTLTISSLQPDDFATYYCGQSYNYPFTFGQGTKVEVK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:23)
[INFO] Main: Simulation completed successfully. (00:01:24)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4114 | |
| 2 | V | H | -0.6699 | |
| 3 | Q | H | -1.1126 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.4148 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.2375 | |
| 8 | G | H | -0.6487 | |
| 9 | G | H | 0.1759 | |
| 11 | G | H | 0.8554 | |
| 12 | V | H | 1.7558 | |
| 13 | V | H | 0.0287 | |
| 14 | Q | H | -1.1438 | |
| 15 | P | H | -1.5688 | |
| 16 | G | H | -1.9628 | |
| 17 | R | H | -2.5192 | |
| 18 | S | H | -1.7358 | |
| 19 | L | H | -0.9643 | |
| 20 | K | H | -1.3560 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.0899 | |
| 23 | C | H | 0.0000 | |
| 24 | L | H | 0.4826 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.1251 | |
| 27 | G | H | -0.4899 | |
| 28 | Y | H | 0.6231 | |
| 29 | I | H | 1.9038 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.1132 | |
| 36 | S | H | 0.5448 | |
| 37 | S | H | 0.9549 | |
| 38 | W | H | 0.5036 | |
| 39 | I | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.8038 | |
| 45 | R | H | -1.4716 | |
| 46 | P | H | -1.2313 | |
| 47 | G | H | -1.6462 | |
| 48 | R | H | -2.6311 | |
| 49 | G | H | -1.6428 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8233 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | R | H | -0.3692 | |
| 56 | I | H | 0.0000 | |
| 57 | D | H | -1.1321 | |
| 58 | P | H | 0.0000 | |
| 59 | S | H | -1.5052 | |
| 62 | D | H | -2.2735 | |
| 63 | G | H | -1.7779 | |
| 64 | E | H | -1.6588 | |
| 65 | V | H | -0.5988 | |
| 66 | H | H | -0.6294 | |
| 67 | Y | H | -0.9796 | |
| 68 | N | H | -1.7649 | |
| 69 | Q | H | -2.6981 | |
| 70 | D | H | -2.5386 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.8647 | |
| 74 | D | H | -2.9964 | |
| 75 | R | H | -1.9990 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.7904 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.4119 | |
| 80 | R | H | -0.9037 | |
| 81 | D | H | -1.5981 | |
| 82 | K | H | -2.0493 | |
| 83 | S | H | -1.7864 | |
| 84 | K | H | -2.3664 | |
| 85 | N | H | -1.4104 | |
| 86 | T | H | -0.7784 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.0464 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -0.7817 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.7024 | |
| 93 | S | H | -1.7067 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -1.7809 | |
| 96 | P | H | -1.3295 | |
| 97 | E | H | -1.5078 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.2203 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.6469 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | G | H | 0.0000 | |
| 108 | F | H | 2.2671 | |
| 109 | L | H | 2.3384 | |
| 113 | P | H | 1.2660 | |
| 114 | W | H | 1.2545 | |
| 115 | F | H | 0.0000 | |
| 116 | A | H | 0.0000 | |
| 117 | D | H | -0.4427 | |
| 118 | W | H | -0.7130 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.5973 | |
| 121 | G | H | -0.4672 | |
| 122 | T | H | 0.3950 | |
| 123 | L | H | 1.5680 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.5736 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.3570 | |
| 128 | S | H | -0.3583 | |
| 1 | D | L | -2.5301 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.2118 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.3138 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.5876 | |
| 8 | P | L | -0.4851 | |
| 9 | S | L | -0.8311 | |
| 10 | T | L | -0.8391 | |
| 11 | L | L | -0.3920 | |
| 12 | S | L | -0.5287 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | 0.0071 | |
| 15 | V | L | 0.7339 | |
| 16 | G | L | -0.4519 | |
| 17 | D | L | -1.2014 | |
| 18 | R | L | -2.1001 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.5457 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.8313 | |
| 23 | C | L | 0.0000 | |
| 24 | K | L | -2.5692 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -2.0726 | |
| 27 | E | L | -2.3943 | |
| 28 | N | L | -2.1641 | |
| 29 | V | L | 0.0000 | |
| 36 | D | L | -1.4260 | |
| 37 | T | L | -0.5238 | |
| 38 | Y | L | 0.4895 | |
| 39 | V | L | 0.0000 | |
| 40 | S | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.6926 | |
| 46 | P | L | -1.2118 | |
| 47 | G | L | -1.6170 | |
| 48 | K | L | -2.5703 | |
| 49 | A | L | -1.6233 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.4524 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.0931 | |
| 56 | G | L | -0.2705 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.8772 | |
| 66 | N | L | -1.3574 | |
| 67 | R | L | -1.5625 | |
| 68 | Y | L | -0.7853 | |
| 69 | T | L | -0.5101 | |
| 70 | G | L | -0.5884 | |
| 71 | V | L | -0.6042 | |
| 72 | P | L | -0.5399 | |
| 74 | S | L | -0.7026 | |
| 75 | R | L | -1.0278 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.7862 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.7956 | |
| 80 | G | L | -1.3589 | |
| 83 | S | L | -1.4858 | |
| 84 | G | L | -1.7577 | |
| 85 | T | L | -2.2553 | |
| 86 | D | L | -2.7700 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7927 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.5985 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.3408 | |
| 93 | S | L | -1.0866 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.9313 | |
| 96 | P | L | -0.7542 | |
| 97 | D | L | -1.8790 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.3989 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.9441 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | G | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | S | L | 0.0000 | |
| 108 | Y | L | 0.0375 | |
| 109 | N | L | -1.0790 | |
| 114 | Y | L | -0.5111 | |
| 115 | P | L | -0.7320 | |
| 116 | F | L | 0.0000 | |
| 117 | T | L | -0.7213 | |
| 118 | F | L | -0.3458 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.6901 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.6273 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -0.6169 | |
| 126 | V | L | 0.7096 | |
| 127 | K | L | -0.8307 |