Project name: query_structure

Status: done

Started: 2026-03-17 00:01:07
Settings
Chain sequence(s) A: NMAIIKEFMRFKVHMEGSVNGHEFEIEGEGEGRPYEGTQTAKLKKVTKGGPLPFAWDILSPQFAAASKAYVKHPADIPDYLKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGEFIYKVKLRGTNFPSDGPVMQKKTMMGWEASSERMYPEDGALKGEIKQRLKLKDGGHHYDAEVKTTYKAKKPVQLPGAYNVNIKLLDITSHNEDYTIVEQYERAEGRHST
C: QVQLVESGGGLVQQAGGSLRLSCVASGSAPSFFAMAWYRQSPGNERELVAALSSLGSTNYADSVKGRFTISMDNAKNTVYLQMNNNVNAEDTAVYYCAAGDFHSCYARKSCDYWGQGTQVTVS
B: NMAIIKEFMRFKVHMEGSVNGHEEFEIEGEGEGRPYEGTQTAKLKVTKGGPLPFAWDILSPQFAAASKAYVKHPADIPDYLKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGEFIYKVKLRGTNFPSDGPVMQKKKTMGWEASSERMYPEDGALKGEIKQRRLKLKDGGHHYDAEVKTTYKAKKPVQLPGAYNVNIKKLLDITSHNEDYTIVEQYERAEGRHST
D: QVQLVESGGGLVQAGGSLRLSCVASGSAPSFFAMAWYRQSPGNERELVAALSSLGSTNYADSVKGRFTISMDNAKNTVYLQMNNNVNAEDTAVYYCAAGDFHSCYARKSCDYWGQGTQVTVS
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:14:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:15:04)
Show buried residues

Minimal score value
-3.7718
Maximal score value
2.0438
Average score
-0.9476
Total score value
-640.5862

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
4 N A -0.5339
5 M A 0.1798
6 A A 0.0378
7 I A -0.0102
8 I A 0.0000
9 K A -1.4416
10 E A -2.0467
11 F A -1.1338
12 M A 0.0000
13 R A -3.0571
14 F A 0.0000
15 K A -3.3042
16 V A 0.0000
17 H A -2.3643
18 M A 0.0000
19 E A -3.3786
20 G A -2.6600
21 S A -2.5610
22 V A 0.0000
23 N A -1.9325
24 G A -1.8900
25 H A -1.9309
26 E A -3.2144
27 F A 0.0000
28 E A -2.9677
29 I A 0.0000
30 E A -3.0182
31 G A 0.0000
32 E A -3.7718
33 G A 0.0000
34 E A -2.5504
35 G A 0.0000
36 R A -2.7080
37 P A 0.0000
38 Y A -1.8223
39 E A -3.1374
40 G A 0.0000
41 T A -2.0881
42 Q A 0.0000
43 T A -1.5185
44 A A 0.0000
45 K A -2.5717
46 L A 0.0000
47 K A -1.9136
48 V A 0.0000
49 T A -1.8018
50 K A -2.9527
51 G A -2.0168
52 G A -1.6341
53 P A -1.1283
54 L A 0.0000
55 P A -0.9015
56 F A 0.0000
57 A A 0.0000
58 W A 0.0000
59 D A 0.0000
60 I A 0.0000
61 L A 0.0000
62 S A 0.0000
63 P A -0.2139
64 Q A 0.0000
65 F A 0.0000
69 S A -0.1653
70 K A -0.3001
71 A A 0.0000
72 Y A 0.0000
73 V A 0.0000
74 K A -2.7234
75 H A -1.8335
76 P A -1.4379
77 A A -1.0084
78 D A -2.0602
79 I A 0.0000
80 P A -0.8150
81 D A -0.5927
82 Y A 0.0000
83 L A 0.0000
84 K A 0.0000
85 L A 0.0038
86 S A 0.0000
87 F A 0.0000
88 P A -1.0137
89 E A -1.3866
90 G A 0.0000
91 F A 0.0000
92 K A -2.1452
93 W A 0.0000
94 E A -2.1295
95 R A 0.0000
96 V A 0.0220
97 M A 0.0000
98 N A -2.1648
99 F A 0.0000
100 E A -2.8941
101 D A -2.1355
102 G A -1.5870
103 G A 0.0000
104 V A -0.8594
105 V A 0.0000
106 T A -0.7756
107 V A 0.0000
108 T A -1.8342
109 Q A 0.0000
110 D A -2.4680
111 S A 0.0000
112 S A -0.9739
113 L A -0.3073
114 Q A -0.7188
115 D A -0.8372
116 G A -0.9367
117 E A -1.5187
118 F A 0.0000
119 I A -1.3721
120 Y A 0.0000
121 K A -2.5764
122 V A 0.0000
123 K A -3.2564
124 L A 0.0000
125 R A -2.6417
126 G A 0.0000
127 T A -1.3744
128 N A -1.5896
129 F A 0.0000
130 P A -1.5477
131 S A -1.6275
132 D A -2.3994
133 G A -1.8166
134 P A -1.9159
135 V A 0.0000
136 M A -1.6539
137 Q A -2.6027
138 K A -2.6676
139 K A -2.6458
140 T A -1.8276
141 M A -1.0614
142 G A -0.8668
143 W A 0.0000
144 E A -1.8394
145 A A -1.2335
146 S A -1.1829
147 S A -1.4266
148 E A 0.0000
149 R A -1.9880
150 M A 0.0000
151 Y A -0.8784
152 P A -1.4936
153 E A -2.9129
154 D A -3.0461
155 G A -2.1726
156 A A 0.0000
157 L A 0.0000
158 K A -1.8300
159 G A 0.0000
160 E A -2.1347
161 I A 0.0000
162 K A -3.1924
163 Q A 0.0000
164 R A -2.2846
165 L A 0.0000
166 K A -2.2670
167 L A -2.4251
168 K A -3.2761
169 D A -3.1419
170 G A -2.3473
171 G A -1.8413
172 H A -2.0871
173 Y A 0.0000
174 D A -2.5672
175 A A 0.0000
176 E A -3.4126
177 V A 0.0000
178 K A -2.2884
179 T A 0.0000
180 T A -1.5599
181 Y A 0.0000
182 K A -2.0116
183 A A 0.0000
184 K A -1.9573
185 K A -1.3204
186 P A -0.8501
187 V A -0.5503
188 Q A -1.0108
189 L A -0.6936
190 P A 0.0000
191 G A -0.8110
192 A A -0.8808
193 Y A 0.0000
194 N A -1.7108
195 V A 0.0000
196 N A -1.8707
197 I A -1.4801
198 K A -1.7591
199 L A -1.0926
200 D A -1.3203
201 I A -0.2366
202 T A -0.5819
203 S A -0.9148
204 H A -1.3390
205 N A -1.6737
206 E A -2.4869
207 D A -1.9540
208 Y A -1.0106
209 T A -0.9071
210 I A -0.7583
211 V A 0.0000
212 E A -1.5195
213 Q A 0.0000
214 Y A -0.8342
215 E A -1.2840
216 R A -2.9539
217 A A 0.0000
218 E A -3.2451
219 G A 0.0000
220 R A -2.3083
221 H A -1.8191
222 S A -1.1360
223 T A -0.5217
4 N B -0.9653
5 M B 0.5977
6 A B 0.4137
7 I B 1.1277
8 I B 0.0000
9 K B -1.8567
10 E B -2.0990
11 F B -1.0348
12 M B 0.0000
13 R B -2.8517
14 F B 0.0000
15 K B -2.7145
16 V B 0.0000
17 H B -2.0075
18 M B 0.0000
19 E B -2.4914
20 G B 0.0000
21 S B -2.2416
22 V B 0.0000
23 N B -1.7442
24 G B -1.7538
25 H B -1.7084
26 E B -2.6304
27 F B 0.0000
28 E B -1.7198
29 I B 0.0000
30 E B -2.2836
31 G B 0.0000
32 E B -3.0855
33 G B 0.0000
34 E B -2.2060
35 G B 0.0000
36 R B -1.9040
37 P B 0.0000
38 Y B -1.0062
39 E B -1.8071
40 G B 0.0000
41 T B -1.5114
42 Q B 0.0000
43 T B -1.2995
44 A B 0.0000
45 K B -2.1515
46 L B 0.0000
47 K B -1.4670
48 V B 0.0000
49 T B -0.9409
50 K B -1.4879
51 G B 0.0000
52 G B 0.0000
53 P B -0.5611
54 L B 0.0000
55 P B -0.5712
56 F B 0.0000
57 A B 0.0000
58 W B 0.0000
59 D B 0.0000
60 I B 0.0000
61 L B 0.0000
62 S B 0.0000
63 P B -0.2562
64 Q B 0.0000
65 F B 0.0000
69 S B -0.1651
70 K B -0.3160
71 A B 0.0000
72 Y B 0.0000
73 V B 0.0000
74 K B -2.1074
75 H B -1.7404
76 P B -1.5436
77 A B -1.0529
78 D B -2.0203
79 I B 0.0000
80 P B -0.7436
81 D B -0.4365
82 Y B 0.0000
83 L B 0.0000
84 K B 0.0000
85 L B 0.8540
86 S B 0.0000
87 F B 0.0000
88 P B -0.6202
89 E B -1.6569
90 G B 0.0000
91 F B 0.0000
92 K B -2.1880
93 W B 0.0000
94 E B -2.2971
95 R B 0.0000
96 V B -0.0941
97 M B 0.0000
98 N B -2.2099
99 F B 0.0000
100 E B -2.8598
101 D B -2.1029
102 G B -1.5819
103 G B 0.0000
104 V B -0.8451
105 V B 0.0000
106 T B -0.8310
107 V B 0.0000
108 T B -1.9074
109 Q B 0.0000
110 D B -2.0308
111 S B 0.0000
112 S B -1.2116
113 L B -1.1613
114 Q B -2.4011
115 D B -2.6348
116 G B -2.0250
117 E B -2.4766
118 F B 0.0000
119 I B -1.5069
120 Y B 0.0000
121 K B -2.5676
122 V B 0.0000
123 K B -2.9752
124 L B 0.0000
125 R B -2.4867
126 G B 0.0000
127 T B -1.2959
128 N B -1.5466
129 F B 0.0000
130 P B -1.4918
131 S B -1.5697
132 D B -2.3855
133 G B -1.6873
134 P B -1.5903
135 V B 0.0000
136 M B -1.4020
137 Q B -2.2513
138 K B -2.0613
139 K B -2.3331
140 T B -1.4328
141 M B -1.0458
142 G B 0.0000
143 W B 0.0000
144 E B -1.3511
145 A B -1.1596
146 S B -1.2385
147 S B -1.4127
148 E B 0.0000
149 R B -2.0527
150 M B 0.0000
151 Y B -0.6614
152 P B -1.1830
153 E B -2.3845
154 D B -2.7094
155 G B -1.9845
156 A B 0.0000
157 L B 0.0000
158 K B -1.6892
159 G B 0.0000
160 E B -2.4822
161 I B 0.0000
162 K B -3.3316
163 Q B 0.0000
164 R B -2.1183
165 L B 0.0000
166 K B 0.0000
167 L B -1.7472
168 K B -2.4069
169 D B -2.7262
170 G B -1.9762
171 G B -1.4634
172 H B -1.5646
173 Y B 0.0000
174 D B -2.4775
175 A B 0.0000
176 E B -3.5172
177 V B 0.0000
178 K B -2.4205
179 T B 0.0000
180 T B -1.5736
181 Y B 0.0000
182 K B -1.5842
183 A B -1.2406
184 K B -1.7152
185 K B -1.1575
186 P B -0.6818
187 V B -0.3422
188 Q B -0.9247
189 L B -0.5527
190 P B 0.0000
191 G B -0.8977
192 A B -0.7290
193 Y B 0.0000
194 N B -1.8812
195 V B 0.0000
196 N B -1.6730
197 I B -1.3203
198 K B -1.9919
199 L B -1.1841
200 D B -1.3306
201 I B 0.0000
202 T B -0.7675
203 S B -1.1864
204 H B -1.4804
205 N B -1.7182
206 E B -2.3373
207 D B -1.5661
208 Y B -0.9022
209 T B 0.0000
210 I B -0.8526
211 V B 0.0000
212 E B -1.4209
213 Q B 0.0000
214 Y B -0.8933
215 E B -1.2691
216 R B -2.3738
217 A B 0.0000
218 E B -2.4588
219 G B 0.0000
220 R B -2.8780
221 H B -2.2763
222 S B -1.2857
223 T B -0.5939
1 Q C -1.7689
2 V C -1.3971
3 Q C -1.2408
4 L C 0.0000
5 V C 0.6696
6 E C 0.0000
7 S C -0.4870
8 G C -0.9122
9 G C -0.6303
10 G C 0.0099
11 L C 1.0965
12 V C 0.0000
13 Q C -0.2717
14 A C -0.6410
15 G C -0.9748
16 G C 0.0000
17 S C 0.0000
18 L C 0.0000
19 R C -0.5212
20 L C 0.0000
21 S C 0.1529
22 C C 0.0000
23 V C 0.1990
24 A C 0.0000
25 S C -0.7802
26 G C -1.2561
27 S C -0.9544
28 A C -0.4686
29 P C -0.0440
30 S C 0.3788
31 F C 1.3616
32 F C 0.7850
33 A C 0.0000
34 M C 0.0000
35 A C 0.0000
36 W C 0.0000
37 Y C 0.0000
38 R C 0.0000
39 Q C -2.1747
40 S C -1.8613
41 P C -1.2024
42 G C -1.8030
43 N C -3.0307
44 E C -3.6191
45 R C -3.0824
46 E C -2.6046
47 L C -1.0247
48 V C 0.0000
49 A C 0.0000
50 A C 0.0000
51 L C 0.0000
52 S C 0.0000
53 S C 0.8879
54 L C 1.5213
55 G C 0.1927
56 S C -0.2590
57 T C -0.6129
58 N C -1.5619
59 Y C -1.3785
60 A C -1.6208
61 D C -2.5772
62 S C -1.8243
63 V C 0.0000
64 K C -2.7528
65 G C -1.7257
66 R C -1.2829
67 F C 0.0000
68 T C -0.6314
69 I C 0.0000
70 S C -0.2267
71 M C -0.7028
72 D C -1.5276
73 N C -2.1818
74 A C -1.7085
75 K C -2.4030
76 N C -1.8789
77 T C 0.0000
78 V C 0.0000
79 Y C 0.2108
80 L C 0.0000
81 Q C -0.3454
82 M C 0.0000
83 N C -0.9155
84 N C -0.9728
85 V C 0.0000
86 N C -1.3848
87 A C -1.2359
88 E C -2.0086
89 D C 0.0000
90 T C -0.7636
91 A C 0.0000
92 V C -0.4643
93 Y C 0.0000
94 Y C -0.2831
95 C C 0.0000
96 A C 0.0000
97 A C 0.0000
98 G C 0.0000
99 D C -0.4457
100 F C 0.1309
101 H C -1.3423
102 S C -1.8579
103 C C 0.0000
104 Y C -1.0260
105 A C -1.5203
106 R C -2.8717
107 K C -3.0646
108 S C -2.1396
109 C C -1.6757
110 D C -1.9723
111 Y C -0.8887
112 W C -0.2060
113 G C -0.2030
114 Q C -0.9962
115 G C -0.6046
116 T C -0.7903
117 Q C -0.9918
118 V C 0.0000
119 T C -0.1472
120 V C 0.0000
121 S C -0.1586
1 Q D -1.8660
2 V D 0.0000
3 Q D -1.2801
4 L D 0.0000
5 V D 0.7128
6 E D 0.0000
7 S D -0.6521
8 G D -1.1138
9 G D -0.8607
10 G D 0.0784
11 L D 0.9085
12 V D 0.0000
13 Q D -1.3931
14 A D -1.6225
15 G D -1.7741
16 G D -1.4229
17 S D -1.5796
18 L D -1.2285
19 R D -2.1004
20 L D 0.0000
21 S D -0.2269
22 C D 0.0000
23 V D 0.2384
24 A D 0.0000
25 S D -0.8182
26 G D -1.2906
27 S D -0.9840
28 A D -0.4073
29 P D 0.0841
30 S D 0.7030
31 F D 2.0438
32 F D 1.1047
33 A D 0.0000
34 M D 0.0000
35 A D 0.0000
36 W D 0.0000
37 Y D 0.0000
38 R D 0.0000
39 Q D -2.2049
40 S D -1.9024
41 P D -1.3459
42 G D -1.8257
43 N D -3.0657
44 E D -3.6350
45 R D -3.1359
46 E D -2.5155
47 L D -0.9724
48 V D 0.0000
49 A D 0.0000
50 A D 0.0000
51 L D 0.0000
52 S D 0.0000
53 S D 1.0437
54 L D 1.6172
55 G D 0.1754
56 S D -0.2284
57 T D -0.5961
58 N D -1.5432
59 Y D -1.3740
60 A D -1.5912
61 D D -2.5736
62 S D -1.8509
63 V D 0.0000
64 K D -2.7754
65 G D -1.9238
66 R D -1.7088
67 F D 0.0000
68 T D -0.9277
69 I D 0.0000
70 S D -0.2661
71 M D -0.8578
72 D D -1.6467
73 N D -2.3523
74 A D -1.8553
75 K D -2.6005
76 N D -2.2978
77 T D 0.0000
78 V D 0.0000
79 Y D -0.1967
80 L D 0.0000
81 Q D -1.1468
82 M D 0.0000
83 N D -1.9653
84 N D -2.3214
85 V D 0.0000
86 N D -2.3837
87 A D -1.6173
88 E D -2.1795
89 D D 0.0000
90 T D -0.8418
91 A D 0.0000
92 V D -0.3955
93 Y D 0.0000
94 Y D -0.2820
95 C D 0.0000
96 A D 0.0000
97 A D 0.0000
98 G D 0.0000
99 D D -0.1979
100 F D 0.3786
101 H D -1.1936
102 S D -1.8203
103 C D 0.0000
104 Y D -0.9236
105 A D -1.4975
106 R D -2.8498
107 K D -3.0311
108 S D -2.1165
109 C D -1.6651
110 D D -1.9981
111 Y D -0.9072
112 W D -0.2432
113 G D -0.2251
114 Q D -0.9935
115 G D -0.6157
116 T D -0.7601
117 Q D -0.9541
118 V D 0.0000
119 T D -0.3147
120 V D 0.0000
121 S D -0.5684
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Laboratory of Theory of Biopolymers 2018