Project name: AL55

Status: done

Started: 2026-05-19 15:51:51
Settings
Chain sequence(s) A: NFMLTQPHSVSESPGKTLTISCTGSSASIASHYVQWYQQRPGGAPTTLIYENDQRPSEVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDGNNHWVFGGGTKLTVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTEC
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:44)
Show buried residues

Minimal score value
-2.0
Maximal score value
1.4849
Average score
-0.3328
Total score value
-71.8872

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -1.2730
2 F A 0.0000
3 M A 1.0534
4 L A 0.0000
5 T A -0.0935
6 Q A -0.1538
7 P A -0.3036
8 H A -1.0127
9 S A -0.2256
10 V A 0.2141
11 S A -0.0770
12 E A -0.4043
13 S A -0.1238
14 P A -0.2843
15 G A -0.8443
16 K A -1.7862
17 T A -0.3771
18 L A 0.0000
19 T A -0.0513
20 I A 0.0000
21 S A -0.0810
22 C A 0.0000
23 T A -0.0406
24 G A -0.0785
25 S A -0.1736
26 S A -0.2309
27 A A -0.0514
28 S A -0.2079
29 I A 0.0000
30 A A 0.0195
31 S A -0.2508
32 H A -0.1069
33 Y A 0.9289
34 V A 0.0000
35 Q A 0.0000
36 W A 0.0000
37 Y A 0.1598
38 Q A -0.1247
39 Q A -0.5078
40 R A -1.4131
41 P A -0.5838
42 G A -0.6003
43 G A -0.5418
44 A A -0.0758
45 P A -0.2758
46 T A -0.0880
47 T A -0.0163
48 L A 0.0000
49 I A 0.0000
50 Y A 0.4742
51 E A -0.5963
52 N A -0.7387
53 D A -2.0000
54 Q A -1.3066
55 R A -0.6685
56 P A -0.1728
57 S A -0.5540
58 E A -1.8266
59 V A -0.1842
60 P A -0.4656
61 D A -1.8842
62 R A -0.6877
63 F A 0.0000
64 S A -0.0960
65 G A -0.3607
66 S A -0.1238
67 I A 0.2918
68 D A -1.1070
69 S A -0.5019
70 S A -0.2834
71 S A -0.2654
72 N A -0.3526
73 S A 0.0000
74 A A 0.0000
75 S A -0.0527
76 L A 0.0000
77 T A -0.0307
78 I A 0.0000
79 S A -0.1864
80 G A -0.3118
81 L A 0.0000
82 K A -0.9469
83 T A -0.5774
84 E A -1.8329
85 D A 0.0000
86 E A -1.1933
87 A A 0.0000
88 D A -0.7196
89 Y A 0.0000
90 Y A 0.3175
91 C A 0.0000
92 Q A 0.0000
93 S A 0.0000
94 Y A 0.1572
95 D A -0.3841
96 G A -0.7626
97 N A -1.5892
98 N A -1.6591
99 H A -1.0273
100 W A 0.9079
101 V A 0.0000
102 F A 1.4849
103 G A 0.1342
104 G A -0.4898
105 G A -0.1143
106 T A 0.0000
107 K A -0.5732
108 L A 0.0000
109 T A 0.0000
110 V A 0.0000
111 L A 0.1944
112 S A -0.2141
113 Q A -0.3314
114 P A -0.6160
115 K A -1.7448
116 A A -0.2906
117 A A 0.0587
118 P A 0.0000
119 S A -0.2129
120 V A 0.0000
121 T A 0.0561
122 L A 0.3239
123 F A 0.9798
124 P A 0.0487
125 P A 0.0000
126 S A -0.1791
127 S A -0.5726
128 E A -1.9057
129 E A -0.5269
130 L A 0.0692
131 Q A -1.1263
132 A A -0.3927
133 N A -1.5741
134 K A -1.9330
135 A A 0.0000
136 T A -0.0336
137 L A 0.0000
138 V A 0.6957
139 C A 0.0000
140 L A 0.6633
141 I A 0.0000
142 S A -0.2208
143 D A -1.0105
144 F A 0.0000
145 Y A 0.0000
146 P A 0.0000
147 G A -0.0740
148 A A 0.0424
149 V A 0.2557
150 T A 0.0233
151 V A 0.2339
152 A A 0.0700
153 W A 0.0000
154 K A -0.5147
155 A A 0.0000
156 D A -0.8359
157 S A -0.3941
158 S A -0.2986
159 P A -0.2827
160 V A 0.1132
161 K A -1.6015
162 A A -0.3353
163 G A -0.3641
164 V A -0.0230
165 E A -1.4471
166 T A -0.3266
167 T A -0.0696
168 T A -0.0881
169 P A -0.0972
170 S A -0.5371
171 K A -1.7687
172 Q A -0.6386
173 S A -0.4389
174 N A -1.2248
175 N A -1.4961
176 K A -0.4772
177 Y A -0.1331
178 A A 0.0398
179 A A 0.0000
180 S A 0.0354
181 S A 0.0000
182 Y A 0.6152
183 L A 0.0000
184 S A -0.1087
185 L A 0.1475
186 T A -0.0180
187 P A -0.3786
188 E A -1.9816
189 Q A -1.2014
190 W A 0.0000
191 K A -1.7387
192 S A -0.6667
193 H A -0.6496
194 K A -1.7652
195 S A -0.3640
196 Y A 0.0000
197 S A -0.0949
198 C A 0.0000
199 Q A -0.5898
200 V A 0.0000
201 T A -0.0367
202 H A 0.0000
203 E A -1.9048
204 G A -0.8122
205 S A -0.1776
206 T A -0.0032
207 V A 0.1190
208 E A -1.9407
209 K A -1.2119
210 T A -0.1981
211 V A 0.1955
212 A A 0.0552
213 P A -0.0650
214 T A -0.4184
215 E A -1.6983
216 C A 0.3965
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018