Project name: 78-1

Status: done

Started: 2026-03-11 14:20:35
Settings
Chain sequence(s) A: VKELLKKYIELVNEALEKKKAGKYEEADKLWWEAFKVYQKIMDALGGKPIFEFAGIFWDDHDGIKYIEEEIEKLKKFI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:04)
Show buried residues

Minimal score value
-4.4956
Maximal score value
1.4914
Average score
-1.4567
Total score value
-113.6217

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 0.2930
2 K A -1.3875
3 E A -2.2765
4 L A -1.5611
5 L A 0.0000
6 K A -2.1486
7 K A -2.7160
8 Y A 0.0000
9 I A 0.0000
10 E A -2.5165
11 L A -1.8594
12 V A 0.0000
13 N A -2.4987
14 E A -2.9848
15 A A 0.0000
16 L A 0.0000
17 E A -3.5578
18 K A -3.6630
19 K A -3.1275
20 K A -2.8840
21 A A -1.9583
22 G A -2.1406
23 K A -3.1186
24 Y A -2.2908
25 E A -3.6015
26 E A -4.1382
27 A A 0.0000
28 D A -3.4036
29 K A -3.0089
30 L A -2.1510
31 W A 0.0000
32 W A -0.3746
33 E A -1.1563
34 A A 0.0000
35 F A -0.1221
36 K A -1.1574
37 V A 0.0000
38 Y A 0.0000
39 Q A -1.9014
40 K A -2.0731
41 I A 0.0000
42 M A -1.6162
43 D A -2.6482
44 A A -1.0160
45 L A -0.5452
46 G A -1.5232
47 G A -1.6741
48 K A -1.7953
49 P A -0.7332
50 I A 1.2884
51 F A -0.3236
52 E A -1.3483
53 F A 0.0000
54 A A 0.0000
55 G A 0.6592
56 I A 1.4914
57 F A 0.0826
58 W A 0.0000
59 D A -2.1032
60 D A -2.2320
61 H A -2.4839
62 D A -2.4801
63 G A 0.0000
64 I A -2.2900
65 K A -2.6597
66 Y A -1.7742
67 I A 0.0000
68 E A -3.5209
69 E A -3.9872
70 E A -3.5083
71 I A 0.0000
72 E A -4.4956
73 K A -3.9267
74 L A 0.0000
75 K A -2.6045
76 K A -1.8294
77 F A 0.6492
78 I A 0.8113
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018