Project name: GP-EX

Status: done

Started: 2025-12-30 20:47:07
Settings
Chain sequence(s) A: SLVEEELFREIDRYLEEKAVQLFLEWLKNGGPS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:07)
Show buried residues

Minimal score value
-3.2031
Maximal score value
1.9001
Average score
-0.82
Total score value
-27.0613

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A 0.1457
2 L A 1.3007
3 V A 1.1674
4 E A -0.7132
5 E A -1.2901
6 E A -1.7737
7 L A -0.3808
8 F A -0.1438
9 R A -2.6140
10 E A -2.6640
11 I A -0.7385
12 D A -2.7466
13 R A -3.2031
14 Y A -1.0745
15 L A -1.1848
16 E A -2.8686
17 E A -2.5466
18 K A -1.5063
19 A A -0.3604
20 V A 0.2653
21 Q A -0.2865
22 L A 1.1493
23 F A 1.9001
24 L A 0.8125
25 E A -0.9362
26 W A 0.3082
27 L A -0.1057
28 K A -1.9391
29 N A -2.0889
30 G A -1.5611
31 G A -0.5430
32 P A -0.3931
33 S A -0.4479
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Laboratory of Theory of Biopolymers 2018