| Chain sequence(s) |
H: EVQLQQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGGINPSNGRTNYNEKFKNKATLTVDKSSSTAYMQLSSLTYEDSAVYYCTRATIPFAYWGQGTLVTVSA
L: DVQMIQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASYPYTFGGGTKLELK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:37)
[INFO] Main: Simulation completed successfully. (00:02:39)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -2.1506 | |
| 2 | V | H | -1.2460 | |
| 3 | Q | H | -2.1057 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.1686 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.9387 | |
| 8 | G | H | -0.5921 | |
| 9 | A | H | 0.2597 | |
| 11 | E | H | 0.0880 | |
| 12 | L | H | 1.0279 | |
| 13 | V | H | -0.1645 | |
| 14 | K | H | -1.3297 | |
| 15 | P | H | -0.9021 | |
| 16 | G | H | -0.8989 | |
| 17 | A | H | -0.8795 | |
| 18 | S | H | -0.9551 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.3170 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.6416 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.5578 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.3998 | |
| 27 | G | H | -1.2693 | |
| 28 | Y | H | -0.5467 | |
| 29 | T | H | -0.0992 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.6956 | |
| 36 | S | H | -0.0165 | |
| 37 | Y | H | 0.5357 | |
| 38 | W | H | 0.2324 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.9008 | |
| 45 | R | H | -1.6247 | |
| 46 | P | H | -1.0902 | |
| 47 | G | H | -1.4031 | |
| 48 | Q | H | -1.9876 | |
| 49 | G | H | -1.3511 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.9975 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | G | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -1.0799 | |
| 58 | P | H | 0.0000 | |
| 59 | S | H | -1.4537 | |
| 62 | N | H | -2.2504 | |
| 63 | G | H | -2.1078 | |
| 64 | R | H | -2.4746 | |
| 65 | T | H | -1.1874 | |
| 66 | N | H | -0.6953 | |
| 67 | Y | H | -1.0652 | |
| 68 | N | H | -2.1191 | |
| 69 | E | H | -3.5125 | |
| 70 | K | H | -3.3274 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.2558 | |
| 74 | N | H | -2.7136 | |
| 75 | K | H | -1.9614 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.8016 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.5517 | |
| 80 | V | H | -0.6758 | |
| 81 | D | H | -1.4342 | |
| 82 | K | H | -2.2469 | |
| 83 | S | H | -1.2249 | |
| 84 | S | H | -0.9999 | |
| 85 | S | H | -1.1505 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.1495 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -0.9870 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -0.9296 | |
| 93 | S | H | -0.9295 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -0.4859 | |
| 96 | Y | H | 0.1288 | |
| 97 | E | H | -1.3361 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.0748 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.1993 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | T | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | A | H | 0.0000 | |
| 108 | T | H | 0.8485 | |
| 109 | I | H | 1.6405 | |
| 114 | P | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | A | H | 0.4383 | |
| 117 | Y | H | 0.2445 | |
| 118 | W | H | -0.3489 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.6905 | |
| 121 | G | H | -0.5634 | |
| 122 | T | H | 0.0000 | |
| 123 | L | H | 0.8006 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.4169 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.0697 | |
| 128 | A | H | -0.2922 | |
| 1 | D | L | -2.2712 | |
| 2 | V | L | -1.6711 | |
| 3 | Q | L | -1.8708 | |
| 4 | M | L | 0.0000 | |
| 5 | I | L | -0.1879 | |
| 6 | Q | L | -0.5290 | |
| 7 | S | L | -0.4772 | |
| 8 | P | L | -0.4204 | |
| 9 | S | L | -0.6670 | |
| 10 | S | L | -0.8872 | |
| 11 | L | L | -0.5513 | |
| 12 | S | L | -0.9006 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.6979 | |
| 15 | L | L | 0.3387 | |
| 16 | G | L | -0.7301 | |
| 17 | E | L | -1.4844 | |
| 18 | R | L | -2.2091 | |
| 19 | V | L | 0.0000 | |
| 20 | S | L | -0.6650 | |
| 21 | L | L | 0.0000 | |
| 22 | T | L | -0.6764 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.4587 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.9536 | |
| 27 | Q | L | -2.8255 | |
| 28 | E | L | -2.6582 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.7599 | |
| 37 | G | L | -0.1522 | |
| 38 | Y | L | 1.0371 | |
| 39 | L | L | 0.0000 | |
| 40 | S | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | L | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.4946 | |
| 46 | P | L | -1.3102 | |
| 47 | D | L | -2.2204 | |
| 48 | G | L | -1.5283 | |
| 49 | T | L | -1.2202 | |
| 50 | I | L | 0.0000 | |
| 51 | K | L | -0.7860 | |
| 52 | R | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.7264 | |
| 56 | A | L | 0.5336 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.2929 | |
| 66 | T | L | 0.0256 | |
| 67 | L | L | -0.1832 | |
| 68 | D | L | -0.5246 | |
| 69 | S | L | -0.4714 | |
| 70 | G | L | -0.8146 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -1.1320 | |
| 74 | K | L | -1.9300 | |
| 75 | R | L | -1.5014 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.6820 | |
| 78 | G | L | -0.4863 | |
| 79 | S | L | -1.0153 | |
| 80 | R | L | -1.8176 | |
| 83 | S | L | -1.3534 | |
| 84 | G | L | -1.4667 | |
| 85 | S | L | -1.9792 | |
| 86 | D | L | -1.7817 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.9065 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6707 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.5900 | |
| 93 | S | L | -1.2923 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.0806 | |
| 96 | S | L | -1.0582 | |
| 97 | E | L | -2.0127 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.7886 | |
| 100 | A | L | 0.0000 | |
| 101 | D | L | -1.1964 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | L | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.0000 | |
| 108 | A | L | 0.3670 | |
| 109 | S | L | -0.1114 | |
| 114 | Y | L | 0.1323 | |
| 115 | P | L | -0.5259 | |
| 116 | Y | L | -0.1034 | |
| 117 | T | L | -0.4912 | |
| 118 | F | L | -0.1118 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.7487 | |
| 121 | G | L | -0.8843 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.4920 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.4039 | |
| 126 | L | L | -0.6029 | |
| 127 | K | L | -1.4932 |