Project name: Leb-V85E

Status: done

Started: 2025-11-19 05:20:24
Settings
Chain sequence(s) H: QVTLREESGPALVKPTQTLTLTCTVSGFSLSAYSVNWIRQPPGKALEWLAMIWGDGKIVYNSALKSRLTISKDTSKNQVVLTMTNMDPVDTATYYCAGDGYYPYAMDNWGQGSLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESK
L: DIVMTQSPDSLSVSLGERATINCRASKSVDSYGNSFMHWYQQKPGQPPKLLIYLASNLESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQNNEDPRTFGGGTKVEIKRTVAAPSVFIFPPSDEEQLKSGTASVVCLLNNFYPREAKVQQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACCEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:08:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:22)
Show buried residues

Minimal score value
-3.625
Maximal score value
2.1989
Average score
-0.7073
Total score value
-309.1071

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.0476
2 V H -0.2095
3 T H -0.6350
4 L H 0.0000
5 R H -2.0322
6 E H -1.3108
7 S H -0.7267
8 G H -0.2471
9 P H -0.1115
10 A H -0.2674
11 L H -0.2293
12 V H 0.0000
13 K H -2.4988
14 P H -1.8204
15 T H -2.0137
16 Q H -2.3344
17 T H -1.4324
18 L H 0.0000
19 T H -0.1740
20 L H 0.0000
21 T H -0.4095
22 C H 0.0000
23 T H -1.1286
24 V H 0.0000
25 S H -0.7202
26 G H -0.4726
27 F H 0.1029
28 S H -0.1602
29 L H 0.0000
30 S H -0.8435
31 A H -0.4372
32 Y H 0.0000
33 S H 0.0000
34 V H 0.0000
35 N H 0.0000
36 W H 0.0000
37 I H 0.0000
38 R H 0.0000
39 Q H -0.8741
40 P H -0.6586
41 P H -1.0348
42 G H -1.4404
43 K H -2.1942
44 A H -1.2109
45 L H 0.0000
46 E H -0.7956
47 W H 0.0000
48 L H 0.0000
49 A H 0.0000
50 M H 0.0000
51 I H 0.0000
52 W H -0.8957
53 G H -1.2369
54 D H -2.2469
55 G H -1.7188
56 K H -1.7115
57 I H 0.0718
58 V H 0.0000
59 Y H -0.5228
60 N H -1.1965
61 S H -1.2571
62 A H -0.5412
63 L H -0.8704
64 K H -1.8633
65 S H -1.1660
66 R H -1.2067
67 L H 0.0000
68 T H -0.2167
69 I H 0.0000
70 S H -0.2052
71 K H -1.0689
72 D H -1.5826
73 T H -1.3511
74 S H -1.4759
75 K H -2.2791
76 N H -1.5921
77 Q H -1.4467
78 V H 0.0000
79 V H 0.0931
80 L H 0.0000
81 T H -0.0316
82 M H 0.0000
82A T H -1.2528
82B N H -2.2560
82C M H 0.0000
83 D H -1.3921
84 P H -0.2026
85 V H 1.2812
86 D H 0.0000
87 T H 0.2697
88 A H 0.0000
89 T H -0.1997
90 Y H 0.0000
91 Y H 0.0000
92 C H 0.0000
93 A H 0.0000
94 G H 0.0000
95 D H 0.0000
96 G H 0.6105
97 Y H 1.9264
98 Y H 2.1989
99 P H 0.0000
100 Y H 1.3400
100A A H 0.0000
100B M H 0.0000
101 D H -1.3945
102 N H -0.9156
103 W H -1.1354
104 G H 0.0000
105 Q H -1.8663
106 G H -1.2155
107 S H -0.6147
108 L H -0.1044
109 V H 0.0000
110 T H 0.0000
111 V H 0.0000
112 S H -0.9641
113 S H -0.8812
114 A H -0.5381
115 S H -0.6587
116 T H -0.7160
117 K H -1.1819
118 G H -1.3802
119 P H -0.5762
120 S H -0.3445
121 V H -0.3425
122 F H 0.0000
123 P H -1.0932
124 L H 0.0000
125 A H 0.0000
126 P H 0.0000
127 C H -0.8785
128 S H -0.8671
129 R H -1.0260
130 S H -0.9263
131 T H -0.7109
132 S H -0.8806
133 E H -1.3663
134 S H -0.9410
135 T H -0.6876
136 A H 0.0000
137 A H 0.0000
138 L H 0.0000
139 G H 0.0000
140 C H 0.0000
141 L H 0.0000
142 V H 0.0000
143 K H 0.0000
144 D H -0.3237
145 Y H 0.0000
146 F H 0.0000
147 P H 0.0000
148 E H -0.3451
149 P H -0.6488
150 V H 0.0000
151 T H -0.6774
152 V H -0.2465
153 S H -0.4891
154 W H 0.0000
155 N H -1.0125
156 S H -0.8022
157 G H -0.6019
158 A H -0.2783
159 L H -0.1192
160 T H -0.2124
161 S H -0.2206
162 G H -0.3406
163 V H 0.1275
164 H H -0.3083
165 T H -0.0181
166 F H 0.0000
167 P H -0.3766
168 A H 0.2142
169 V H 0.6150
170 L H 1.2784
171 Q H 0.3950
172 S H -0.0268
173 S H -0.1723
174 G H 0.1029
175 L H 0.2367
176 Y H 0.5218
177 S H 0.0000
178 L H 0.0000
179 S H 0.0000
180 S H 0.0000
181 V H 0.0000
182 V H 0.0000
183 T H -0.1350
184 V H 0.0000
185 P H -0.5186
186 S H -0.6719
187 S H -0.6610
188 S H -0.7382
189 L H -0.8212
190 G H -1.1476
191 T H -1.0181
192 K H -1.7708
193 T H -1.6377
194 Y H 0.0000
195 T H -1.9686
196 C H 0.0000
197 N H -1.6459
198 V H 0.0000
199 D H -2.0680
200 H H 0.0000
201 K H -2.7552
202 P H -1.5383
203 S H -1.8066
204 N H -2.6065
205 T H -2.1015
206 K H -2.7477
207 V H -1.5031
208 D H -2.6710
209 K H -2.1691
210 R H -2.8693
211 V H 0.0000
212 E H -2.7579
213 S H -1.8378
214 K H -2.5742
1 D L -2.3843
2 I L 0.0000
3 V L 0.6590
4 M L 0.0000
5 T L -0.8490
6 Q L 0.0000
7 S L -1.5701
8 P L -1.4224
9 D L -2.2055
10 S L -1.1871
11 L L -0.6634
12 S L -0.4670
13 V L -0.9374
14 S L -0.9051
15 L L 0.0780
16 G L -0.9510
17 E L -2.3176
18 R L -2.5843
19 A L 0.0000
20 T L -0.7365
21 I L 0.0000
22 N L -1.9183
23 C L 0.0000
24 R L -2.3971
25 A L 0.0000
26 S L -1.1992
27 K L -2.3705
27A S L -1.9196
27B V L 0.0000
27C D L -1.3328
27D S L -0.4649
28 Y L 0.6023
29 G L -0.5444
30 N L -1.0724
31 S L -0.7704
32 F L -0.5407
33 M L 0.0000
34 H L 0.0000
35 W L 0.0000
36 Y L 0.0000
37 Q L 0.0000
38 Q L 0.0000
39 K L -1.6217
40 P L -1.3453
41 G L -1.4991
42 Q L -1.8558
43 P L -1.4407
44 P L 0.0000
45 K L -1.9038
46 L L 0.0000
47 L L 0.0000
48 I L 0.0000
49 Y L 0.2076
50 L L 0.0941
51 A L 0.0000
52 S L -0.5981
53 N L -0.6866
54 L L -0.4192
55 E L -0.9891
56 S L -0.7557
57 G L -0.8322
58 V L 0.0000
59 P L -1.1928
60 D L -2.0555
61 R L -1.5907
62 F L 0.0000
63 S L -0.7935
64 G L -0.5163
65 S L -0.9311
66 G L -1.3055
67 S L -1.3714
68 G L -1.5755
69 T L -1.8858
70 D L -2.3121
71 F L 0.0000
72 T L -1.1579
73 L L 0.0000
74 T L -0.7300
75 I L 0.0000
76 S L -1.7265
77 S L -1.3828
78 L L 0.0000
79 Q L -1.2873
80 A L -1.6308
81 E L -2.3302
82 D L 0.0000
83 V L 0.0000
84 A L 0.0000
85 V L -0.3131
86 Y L 0.0000
87 Y L 0.0000
88 C L 0.0000
89 Q L 0.0000
90 Q L 0.0000
91 N L -1.2175
92 N L -2.0234
93 E L -3.4839
94 D L -3.1531
95 P L 0.0000
96 R L 0.0000
97 T L -0.5696
98 F L 0.2264
99 G L 0.0000
100 G L -0.8921
101 G L -1.0416
102 T L 0.0000
103 K L -0.7772
104 V L 0.0000
105 E L -0.9629
106 I L 0.0000
107 K L -1.1831
108 R L -0.6161
109 T L 0.1179
110 V L 0.7318
111 A L 0.1203
112 A L -0.0514
113 P L 0.0000
114 S L -0.2240
115 V L 0.0000
116 F L 0.0000
117 I L 0.0000
118 F L 0.0000
119 P L 0.0000
120 P L 0.0000
121 S L 0.0000
122 D L -3.1107
123 E L -2.9454
124 Q L 0.0000
125 L L -2.2397
126 K L -2.8106
127 S L -1.7158
128 G L -1.1840
129 T L -1.0040
130 A L 0.0000
131 S L 0.0000
132 V L 0.0000
133 V L 0.0000
134 C L 0.0000
135 L L 0.0000
136 L L 0.0000
137 N L 0.0000
138 N L -0.9665
139 F L 0.0000
140 Y L 0.0000
141 P L -1.6665
142 R L -3.0347
143 E L -3.2574
144 A L -2.3721
145 K L -2.4538
146 V L -1.1222
147 Q L -0.5177
148 W L 0.0000
149 K L -0.5117
150 V L 0.0000
151 D L -1.8426
152 N L -1.4770
153 A L -0.2299
154 L L 0.7806
155 Q L -0.2391
156 S L -0.6551
157 G L -1.2240
158 N L -1.5287
159 S L -1.3188
160 Q L -1.1755
161 E L -1.6281
162 S L -0.7127
163 V L -0.7813
164 T L -1.0713
165 E L -2.0593
166 Q L 0.0000
167 D L -2.1583
168 S L -2.3989
169 K L -2.6706
170 D L -1.9597
171 S L 0.0000
172 T L 0.0000
173 Y L 0.0000
174 S L 0.0000
175 L L 0.0000
176 S L 0.0000
177 S L 0.0000
178 T L -0.6329
179 L L 0.0000
180 T L -0.6354
181 L L -0.8992
182 S L -1.0922
183 K L -2.0778
184 A L -1.9385
185 D L -2.7038
186 Y L 0.0000
187 E L -3.4831
188 K L -3.6250
189 H L -2.8885
190 K L -2.8165
191 V L -1.1125
192 Y L 0.0000
193 A L 0.0000
194 C L 0.0000
195 E L -0.8582
196 V L 0.0000
197 T L -1.2318
198 H L 0.0000
199 Q L -1.6728
200 G L -0.3028
201 L L -0.2046
202 S L -0.4820
203 S L -0.4267
204 P L -0.5650
205 V L -0.0091
206 T L -0.4567
207 K L -0.6988
208 S L -0.4810
209 F L 0.0000
210 N L -1.3301
211 R L -2.2128
212 G L -1.8566
213 E L -2.2538
214 C L -0.5496
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Laboratory of Theory of Biopolymers 2018