Project name: istop

Status: done

Started: 2024-06-11 13:49:34
Settings
Chain sequence(s) A: GTNLSVPNPLGFFPDHGGGGGGGGGGGGGGGGGGGGGGGGGDANKVG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:05)
Show buried residues

Minimal score value
-2.9655
Maximal score value
2.526
Average score
-0.9305
Total score value
-43.7344

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.6567
2 T A -0.8928
3 N A -0.9418
4 L A 0.7772
5 S A -0.0367
6 V A 0.8956
7 P A 0.3868
8 N A -0.0840
9 P A 0.4488
10 L A 1.6817
11 G A 1.1247
12 F A 2.5260
13 F A 1.9830
14 P A -0.0990
15 D A -1.8367
16 H A -0.6371
17 G A -0.7395
18 G A -1.0787
19 G A -1.2540
20 G A -1.8169
21 G A -1.5386
22 G A -1.4633
23 G A -1.5759
24 G A -2.0904
25 G A -1.5942
26 G A -1.4181
27 G A -1.5592
28 G A -1.8105
29 G A -2.2360
30 G A -1.6265
31 G A -1.0584
32 G A -1.3616
33 G A -1.6123
34 G A -1.7773
35 G A -1.3284
36 G A -1.3027
37 G A -1.4300
38 G A -1.3494
39 G A -1.4397
40 G A -1.7244
41 G A -2.1807
42 D A -2.9655
43 A A -2.0874
44 N A -2.4030
45 K A -2.2514
46 V A 0.1277
47 G A -0.4271
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018