| Chain sequence(s) |
H: EVQLQQSGAELAKPGASVKMSCKASGYTFTNFWIHWVKQRPGQGLEWIGYITPTTDYTDYNQKFKDKATLTADKSSSTAYMQLSSLTSEDSAIYYCARGSSGYAYWGQGTTLTVSS
L: DIQMIQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASYPYTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:27)
[INFO] Main: Simulation completed successfully. (00:02:29)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -2.1538 | |
| 2 | V | H | -1.2710 | |
| 3 | Q | H | -2.1155 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.1298 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.8986 | |
| 8 | G | H | -0.6793 | |
| 9 | A | H | 0.0395 | |
| 11 | E | H | 0.2210 | |
| 12 | L | H | 0.9634 | |
| 13 | A | H | -0.3353 | |
| 14 | K | H | -1.7671 | |
| 15 | P | H | -1.4355 | |
| 16 | G | H | -1.1813 | |
| 17 | A | H | -0.9339 | |
| 18 | S | H | -0.9105 | |
| 19 | V | H | -0.5559 | |
| 20 | K | H | -1.0006 | |
| 21 | M | H | 0.0000 | |
| 22 | S | H | -0.5379 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.4233 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.3732 | |
| 27 | G | H | -1.2526 | |
| 28 | Y | H | -0.7046 | |
| 29 | T | H | -0.5291 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.9319 | |
| 36 | N | H | -1.0734 | |
| 37 | F | H | -0.1417 | |
| 38 | W | H | 0.3290 | |
| 39 | I | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.8733 | |
| 45 | R | H | -1.4671 | |
| 46 | P | H | -1.0590 | |
| 47 | G | H | -1.3439 | |
| 48 | Q | H | -1.9319 | |
| 49 | G | H | -1.3550 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.1085 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | Y | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | T | H | 0.0692 | |
| 58 | P | H | 0.0000 | |
| 59 | T | H | -0.6444 | |
| 62 | T | H | -0.2517 | |
| 63 | D | H | -0.5225 | |
| 64 | Y | H | 0.8207 | |
| 65 | T | H | 0.3738 | |
| 66 | D | H | 0.0090 | |
| 67 | Y | H | -0.8916 | |
| 68 | N | H | 0.0000 | |
| 69 | Q | H | -2.9571 | |
| 70 | K | H | -3.0650 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.4714 | |
| 74 | D | H | -3.1945 | |
| 75 | K | H | -2.1871 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.8837 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.3328 | |
| 80 | A | H | -0.7135 | |
| 81 | D | H | -1.4669 | |
| 82 | K | H | -1.8441 | |
| 83 | S | H | -1.0778 | |
| 84 | S | H | -0.9097 | |
| 85 | S | H | -1.0298 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.0700 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -0.8539 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -0.9763 | |
| 93 | S | H | -0.9932 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.2597 | |
| 96 | S | H | -1.3644 | |
| 97 | E | H | -1.9182 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.6062 | |
| 100 | A | H | 0.0000 | |
| 101 | I | H | 0.0718 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | -0.0332 | |
| 107 | G | H | 0.0000 | |
| 108 | S | H | -0.2523 | |
| 109 | S | H | 0.0940 | |
| 114 | G | H | 0.0000 | |
| 115 | Y | H | 0.0000 | |
| 116 | A | H | 0.0772 | |
| 117 | Y | H | 0.1115 | |
| 118 | W | H | -0.4478 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.8014 | |
| 121 | G | H | -0.7817 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | -0.0020 | |
| 124 | L | H | 0.0000 | |
| 125 | T | H | -0.0333 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.6880 | |
| 128 | S | H | -0.7931 | |
| 1 | D | L | -2.0467 | |
| 2 | I | L | -1.5180 | |
| 3 | Q | L | -1.8697 | |
| 4 | M | L | 0.0000 | |
| 5 | I | L | -0.0634 | |
| 6 | Q | L | -0.4761 | |
| 7 | S | L | -0.4396 | |
| 8 | P | L | -0.4356 | |
| 9 | S | L | -0.6615 | |
| 10 | S | L | -1.0421 | |
| 11 | L | L | -0.5883 | |
| 12 | S | L | -0.7822 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.7431 | |
| 15 | L | L | -0.3418 | |
| 16 | G | L | -1.2107 | |
| 17 | E | L | -1.8219 | |
| 18 | R | L | -2.3157 | |
| 19 | V | L | 0.0000 | |
| 20 | S | L | -0.6153 | |
| 21 | L | L | 0.0000 | |
| 22 | T | L | -0.6549 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.3899 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.9311 | |
| 27 | Q | L | -2.8231 | |
| 28 | E | L | -2.6055 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.6546 | |
| 37 | G | L | 0.0391 | |
| 38 | Y | L | 1.0734 | |
| 39 | L | L | 0.0000 | |
| 40 | S | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | L | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.5667 | |
| 46 | P | L | -1.3942 | |
| 47 | D | L | -2.2581 | |
| 48 | G | L | -1.5155 | |
| 49 | T | L | -1.3096 | |
| 50 | I | L | 0.0000 | |
| 51 | K | L | -0.7367 | |
| 52 | R | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.5215 | |
| 56 | A | L | 0.5206 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.2114 | |
| 66 | T | L | 0.0101 | |
| 67 | L | L | -0.2187 | |
| 68 | D | L | -0.3715 | |
| 69 | S | L | -0.4921 | |
| 70 | G | L | -0.8270 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -1.2449 | |
| 74 | K | L | -1.8914 | |
| 75 | R | L | -1.5258 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.6029 | |
| 78 | G | L | -0.4126 | |
| 79 | S | L | -0.9067 | |
| 80 | R | L | -1.6407 | |
| 83 | S | L | -1.2713 | |
| 84 | G | L | -1.3944 | |
| 85 | S | L | -1.9311 | |
| 86 | D | L | -1.5157 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.8432 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6170 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.5594 | |
| 93 | S | L | -1.6516 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.9370 | |
| 96 | S | L | -1.1773 | |
| 97 | E | L | -2.1441 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.8893 | |
| 100 | A | L | 0.0000 | |
| 101 | D | L | -1.1218 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | L | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.8053 | |
| 108 | A | L | 0.3049 | |
| 109 | S | L | 0.1761 | |
| 114 | Y | L | 0.8263 | |
| 115 | P | L | -0.2539 | |
| 116 | Y | L | 0.1375 | |
| 117 | T | L | -0.4955 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.8660 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.7111 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.3152 | |
| 126 | I | L | 0.5761 | |
| 127 | K | L | -0.9915 |