| Chain sequence(s) |
A: GGKGHFF
C: GGKGHFF B: GGKGHFF E: GGKGHFF D: GGKGHFF G: GGKGHFF F: GGKGHFF I: GGKGHFF H: GGKGHFF K: GGKGHFF J: GGKGHFF L: GGKGHFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:20)
[INFO] Main: Simulation completed successfully. (00:05:24)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.4299 | |
| 2 | G | A | 0.0000 | |
| 3 | K | A | -1.8904 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | -0.5676 | |
| 6 | F | A | 0.0000 | |
| 7 | F | A | 1.9257 | |
| 1 | G | B | -0.5106 | |
| 2 | G | B | 0.0000 | |
| 3 | K | B | -1.9450 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | -0.6135 | |
| 6 | F | B | 0.0000 | |
| 7 | F | B | 1.7571 | |
| 1 | G | C | -0.9817 | |
| 2 | G | C | 0.0000 | |
| 3 | K | C | -2.9621 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | -0.7466 | |
| 6 | F | C | 0.0000 | |
| 7 | F | C | 2.1972 | |
| 1 | G | D | -1.1027 | |
| 2 | G | D | -1.5419 | |
| 3 | K | D | -2.9619 | |
| 4 | G | D | -2.1255 | |
| 5 | H | D | -0.6761 | |
| 6 | F | D | 1.4923 | |
| 7 | F | D | 2.6130 | |
| 1 | G | E | -0.2236 | |
| 2 | G | E | -0.4443 | |
| 3 | K | E | -2.3190 | |
| 4 | G | E | -2.3238 | |
| 5 | H | E | -1.3997 | |
| 6 | F | E | 0.1056 | |
| 7 | F | E | 1.8715 | |
| 1 | G | F | -0.6651 | |
| 2 | G | F | 0.0000 | |
| 3 | K | F | -2.6350 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -0.8812 | |
| 6 | F | F | 0.0000 | |
| 7 | F | F | 2.4002 | |
| 1 | G | G | -0.7804 | |
| 2 | G | G | 0.0000 | |
| 3 | K | G | -2.1877 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | -0.5878 | |
| 6 | F | G | 0.0000 | |
| 7 | F | G | 2.6315 | |
| 1 | G | H | -0.7569 | |
| 2 | G | H | 0.0000 | |
| 3 | K | H | -2.0934 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | -0.4874 | |
| 6 | F | H | 0.0000 | |
| 7 | F | H | 2.6738 | |
| 1 | G | I | -0.7620 | |
| 2 | G | I | 0.0000 | |
| 3 | K | I | -2.3724 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | -0.6452 | |
| 6 | F | I | 0.0000 | |
| 7 | F | I | 2.7400 | |
| 1 | G | J | -0.8037 | |
| 2 | G | J | -1.1436 | |
| 3 | K | J | -2.5904 | |
| 4 | G | J | -1.9603 | |
| 5 | H | J | -0.8846 | |
| 6 | F | J | 0.8665 | |
| 7 | F | J | 2.5030 | |
| 1 | G | K | -0.1130 | |
| 2 | G | K | -0.2403 | |
| 3 | K | K | -2.2167 | |
| 4 | G | K | 0.0000 | |
| 5 | H | K | -1.3881 | |
| 6 | F | K | 0.0000 | |
| 7 | F | K | 1.6260 | |
| 1 | G | L | -0.5217 | |
| 2 | G | L | 0.0000 | |
| 3 | K | L | -2.2206 | |
| 4 | G | L | 0.0000 | |
| 5 | H | L | -0.7758 | |
| 6 | F | L | 0.0000 | |
| 7 | F | L | 1.5126 |