Chain sequence(s) |
A: NVDPNANPNVD
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | NA1A |
Energy difference between WT (input) and mutated protein (by FoldX) | -0.0567073 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:00:02) [INFO] FoldX: Starting FoldX energy minimalization (00:00:03) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:04) [INFO] Main: Simulation completed successfully. (00:00:04) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | A | A | 0.4518 | mutated: NA1A |
2 | V | A | 0.6920 | |
3 | D | A | -1.5708 | |
4 | P | A | -1.5930 | |
5 | N | A | -2.1771 | |
6 | A | A | -1.3004 | |
7 | N | A | -1.8277 | |
8 | P | A | -1.7567 | |
9 | N | A | -1.4841 | |
10 | V | A | -0.2582 | |
11 | D | A | -1.5870 |