Project name: query_structure

Status: done

Started: 2025-11-29 10:48:09
Settings
Chain sequence(s) A: CGETCFGGTCNTPGCSCTWPICTRDGLPV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:11)
Show buried residues

Minimal score value
-2.1298
Maximal score value
1.9217
Average score
-0.0038
Total score value
-0.1108

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A 0.4096
2 G A 0.1285
3 E A 0.0979
4 T A 0.5718
5 C A 0.0000
6 F A 1.9217
7 G A 0.4924
8 G A 0.4187
9 T A -0.0459
10 C A -0.5648
11 N A -1.4129
12 T A -1.1328
13 P A -0.9880
14 G A -1.5712
15 C A -1.1327
16 S A -0.7480
17 C A 0.4944
18 T A 0.8663
19 W A 1.5982
20 P A 1.1973
21 I A 1.2750
22 C A 0.0000
23 T A 0.0000
24 R A -1.6688
25 D A -2.1298
26 G A -0.9374
27 L A 0.5832
28 P A 0.6445
29 V A 1.5220
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Laboratory of Theory of Biopolymers 2018