| Chain sequence(s) |
A: RGDGWKPFVIDAHVLIALDTGIHGIKLVFF
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:01)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | A | -1.9249 | |
| 2 | G | A | -1.0855 | |
| 3 | D | A | -1.9532 | |
| 4 | G | A | -0.5802 | |
| 5 | W | A | 0.7949 | |
| 6 | K | A | -1.5299 | |
| 7 | P | A | -0.1913 | |
| 8 | F | A | 2.2128 | |
| 9 | V | A | 2.3375 | |
| 10 | I | A | 1.1593 | |
| 11 | D | A | -1.4234 | |
| 12 | A | A | -0.2387 | |
| 13 | H | A | -0.8130 | |
| 14 | V | A | 0.0000 | |
| 15 | L | A | 1.8677 | |
| 16 | I | A | 1.6378 | |
| 17 | A | A | 0.0000 | |
| 18 | L | A | 1.2283 | |
| 19 | D | A | -1.3423 | |
| 20 | T | A | -0.4545 | |
| 21 | G | A | 0.0218 | |
| 22 | I | A | 1.7783 | |
| 23 | H | A | -0.7214 | |
| 24 | G | A | -0.5016 | |
| 25 | I | A | 0.4206 | |
| 26 | K | A | -1.3719 | |
| 27 | L | A | 1.1191 | |
| 28 | V | A | 2.3037 | |
| 29 | F | A | 2.5815 | |
| 30 | F | A | 2.2747 |