Project name: Pep5-Mut16-KLVFF

Status: done

Started: 2026-02-09 08:29:58
Settings
Chain sequence(s) A: RGDGWKPFVIDAHVLIALDTGIHGIKLVFF
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:02)
Show buried residues

Minimal score value
-1.9532
Maximal score value
2.5815
Average score
0.2535
Total score value
7.6062

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.9249
2 G A -1.0855
3 D A -1.9532
4 G A -0.5802
5 W A 0.7949
6 K A -1.5299
7 P A -0.1913
8 F A 2.2128
9 V A 2.3375
10 I A 1.1593
11 D A -1.4234
12 A A -0.2387
13 H A -0.8130
14 V A 0.0000
15 L A 1.8677
16 I A 1.6378
17 A A 0.0000
18 L A 1.2283
19 D A -1.3423
20 T A -0.4545
21 G A 0.0218
22 I A 1.7783
23 H A -0.7214
24 G A -0.5016
25 I A 0.4206
26 K A -1.3719
27 L A 1.1191
28 V A 2.3037
29 F A 2.5815
30 F A 2.2747
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018