Project name: initial [mutate: VR11A]

Status: done

Started: 2026-07-09 04:28:47
Settings
Chain sequence(s) A: GIPEFKQKALVAKVSQREEMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues VR11A
Energy difference between WT (input) and mutated protein (by FoldX) -1.36858 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:47)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:51)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:36)
Show buried residues

Minimal score value
-3.7588
Maximal score value
1.4476
Average score
-1.2298
Total score value
-124.2069

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.2545
2 I A 1.4476
3 P A 0.1755
4 E A -1.4046
5 F A -0.2795
6 K A -1.9608
7 Q A -2.3757
8 K A -2.7659
9 A A -1.5790
10 L A -1.1521
11 R A -1.8443 mutated: VR11A
12 A A -1.3281
13 K A -1.6144
14 V A -0.1934
15 S A -1.1927
16 Q A -2.1489
17 R A -2.6553
18 E A -3.3766
19 E A -3.3484
20 M A 0.0000
21 V A -3.0862
22 K A -3.6590
23 K A -2.9687
24 C A 0.0000
25 L A -1.7350
26 G A -1.7697
27 E A -1.8796
28 L A 0.0000
29 T A -1.4333
30 E A -2.5569
31 V A 0.0000
32 C A 0.0000
33 K A -2.0486
34 S A -1.4151
35 L A 0.0000
36 G A 0.0000
37 K A -1.0663
38 V A 1.1103
39 F A 0.9550
40 G A 0.1503
41 V A 0.1527
42 H A -0.5040
43 Y A -0.4926
44 F A 1.0485
45 N A 0.0446
46 I A 0.0000
47 F A 0.0000
48 N A -1.2199
49 T A -0.7037
50 V A -1.0577
51 T A 0.0000
52 L A 0.0000
53 K A -2.2251
54 K A -2.2650
55 L A 0.0000
56 A A 0.0000
57 E A -2.8996
58 S A -1.3917
59 L A 0.0000
60 S A -0.9532
61 S A -1.1144
62 D A -1.0818
63 P A -1.6465
64 E A -2.1526
65 V A -0.9288
66 L A 0.0000
67 L A -2.0218
68 Q A -2.0762
69 I A 0.0000
70 D A -2.5856
71 G A -1.7486
72 V A 0.0000
73 T A -2.6577
74 E A -3.7588
75 D A -3.7528
76 K A -2.7534
77 L A -2.8638
78 E A -3.6793
79 K A -3.0057
80 Y A 0.0000
81 G A 0.0000
82 A A -1.1062
83 E A -1.2852
84 V A 0.0000
85 I A -0.5287
86 S A -0.6794
87 V A -0.8328
88 L A 0.0000
89 Q A -1.8152
90 K A -1.6064
91 Y A 0.0000
92 S A -1.3822
93 E A -2.5009
94 W A -0.7360
95 T A -0.6484
96 S A -0.7611
97 P A -1.6306
98 A A -2.0053
99 E A -3.1622
100 D A -2.9997
101 S A -1.4872
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018