| Chain sequence(s) |
A: GIPEFKQKALVAKVSQREEMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTSPAEDS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VR11A |
| Energy difference between WT (input) and mutated protein (by FoldX) | -1.36858 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:47)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:51)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:36)
[INFO] Main: Simulation completed successfully. (00:01:36)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | 0.2545 | |
| 2 | I | A | 1.4476 | |
| 3 | P | A | 0.1755 | |
| 4 | E | A | -1.4046 | |
| 5 | F | A | -0.2795 | |
| 6 | K | A | -1.9608 | |
| 7 | Q | A | -2.3757 | |
| 8 | K | A | -2.7659 | |
| 9 | A | A | -1.5790 | |
| 10 | L | A | -1.1521 | |
| 11 | R | A | -1.8443 | mutated: VR11A |
| 12 | A | A | -1.3281 | |
| 13 | K | A | -1.6144 | |
| 14 | V | A | -0.1934 | |
| 15 | S | A | -1.1927 | |
| 16 | Q | A | -2.1489 | |
| 17 | R | A | -2.6553 | |
| 18 | E | A | -3.3766 | |
| 19 | E | A | -3.3484 | |
| 20 | M | A | 0.0000 | |
| 21 | V | A | -3.0862 | |
| 22 | K | A | -3.6590 | |
| 23 | K | A | -2.9687 | |
| 24 | C | A | 0.0000 | |
| 25 | L | A | -1.7350 | |
| 26 | G | A | -1.7697 | |
| 27 | E | A | -1.8796 | |
| 28 | L | A | 0.0000 | |
| 29 | T | A | -1.4333 | |
| 30 | E | A | -2.5569 | |
| 31 | V | A | 0.0000 | |
| 32 | C | A | 0.0000 | |
| 33 | K | A | -2.0486 | |
| 34 | S | A | -1.4151 | |
| 35 | L | A | 0.0000 | |
| 36 | G | A | 0.0000 | |
| 37 | K | A | -1.0663 | |
| 38 | V | A | 1.1103 | |
| 39 | F | A | 0.9550 | |
| 40 | G | A | 0.1503 | |
| 41 | V | A | 0.1527 | |
| 42 | H | A | -0.5040 | |
| 43 | Y | A | -0.4926 | |
| 44 | F | A | 1.0485 | |
| 45 | N | A | 0.0446 | |
| 46 | I | A | 0.0000 | |
| 47 | F | A | 0.0000 | |
| 48 | N | A | -1.2199 | |
| 49 | T | A | -0.7037 | |
| 50 | V | A | -1.0577 | |
| 51 | T | A | 0.0000 | |
| 52 | L | A | 0.0000 | |
| 53 | K | A | -2.2251 | |
| 54 | K | A | -2.2650 | |
| 55 | L | A | 0.0000 | |
| 56 | A | A | 0.0000 | |
| 57 | E | A | -2.8996 | |
| 58 | S | A | -1.3917 | |
| 59 | L | A | 0.0000 | |
| 60 | S | A | -0.9532 | |
| 61 | S | A | -1.1144 | |
| 62 | D | A | -1.0818 | |
| 63 | P | A | -1.6465 | |
| 64 | E | A | -2.1526 | |
| 65 | V | A | -0.9288 | |
| 66 | L | A | 0.0000 | |
| 67 | L | A | -2.0218 | |
| 68 | Q | A | -2.0762 | |
| 69 | I | A | 0.0000 | |
| 70 | D | A | -2.5856 | |
| 71 | G | A | -1.7486 | |
| 72 | V | A | 0.0000 | |
| 73 | T | A | -2.6577 | |
| 74 | E | A | -3.7588 | |
| 75 | D | A | -3.7528 | |
| 76 | K | A | -2.7534 | |
| 77 | L | A | -2.8638 | |
| 78 | E | A | -3.6793 | |
| 79 | K | A | -3.0057 | |
| 80 | Y | A | 0.0000 | |
| 81 | G | A | 0.0000 | |
| 82 | A | A | -1.1062 | |
| 83 | E | A | -1.2852 | |
| 84 | V | A | 0.0000 | |
| 85 | I | A | -0.5287 | |
| 86 | S | A | -0.6794 | |
| 87 | V | A | -0.8328 | |
| 88 | L | A | 0.0000 | |
| 89 | Q | A | -1.8152 | |
| 90 | K | A | -1.6064 | |
| 91 | Y | A | 0.0000 | |
| 92 | S | A | -1.3822 | |
| 93 | E | A | -2.5009 | |
| 94 | W | A | -0.7360 | |
| 95 | T | A | -0.6484 | |
| 96 | S | A | -0.7611 | |
| 97 | P | A | -1.6306 | |
| 98 | A | A | -2.0053 | |
| 99 | E | A | -3.1622 | |
| 100 | D | A | -2.9997 | |
| 101 | S | A | -1.4872 |