| Chain sequence(s) |
A: GSKGHFF
C: GSKGHFF B: GSKGHFF E: GSKGHFF D: GSKGHFF G: GSKGHFF F: GSKGHFF I: GSKGHFF H: GSKGHFF K: GSKGHFF J: GSKGHFF L: GSKGHFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:52)
[INFO] Main: Simulation completed successfully. (00:05:55)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.2469 | |
| 2 | S | A | -1.5884 | |
| 3 | K | A | -2.5760 | |
| 4 | G | A | -1.8407 | |
| 5 | H | A | -1.8101 | |
| 6 | F | A | 0.0000 | |
| 7 | F | A | 1.5462 | |
| 1 | G | B | -1.8755 | |
| 2 | S | B | -2.4514 | |
| 3 | K | B | -2.7459 | |
| 4 | G | B | -1.4846 | |
| 5 | H | B | -0.3855 | |
| 6 | F | B | 2.5519 | |
| 7 | F | B | 3.1293 | |
| 1 | G | C | -1.6325 | |
| 2 | S | C | -1.7248 | |
| 3 | K | C | -2.8459 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | -0.1122 | |
| 6 | F | C | 1.3097 | |
| 7 | F | C | 0.5346 | |
| 1 | G | D | -1.0172 | |
| 2 | S | D | -1.2505 | |
| 3 | K | D | -1.8512 | |
| 4 | G | D | -0.4086 | |
| 5 | H | D | 0.3363 | |
| 6 | F | D | 2.1368 | |
| 7 | F | D | 0.0000 | |
| 1 | G | E | -1.1238 | |
| 2 | S | E | -1.6805 | |
| 3 | K | E | -2.2564 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | 0.0260 | |
| 6 | F | E | 2.2121 | |
| 7 | F | E | 1.8717 | |
| 1 | G | F | -0.9734 | |
| 2 | S | F | -1.1314 | |
| 3 | K | F | -1.5790 | |
| 4 | G | F | -0.4259 | |
| 5 | H | F | -0.2125 | |
| 6 | F | F | 2.0518 | |
| 7 | F | F | 2.3970 | |
| 1 | G | G | -0.8758 | |
| 2 | S | G | -1.4387 | |
| 3 | K | G | -1.6689 | |
| 4 | G | G | -0.8308 | |
| 5 | H | G | -0.2303 | |
| 6 | F | G | 1.4842 | |
| 7 | F | G | 1.7176 | |
| 1 | G | H | -1.0862 | |
| 2 | S | H | -1.6941 | |
| 3 | K | H | -2.5004 | |
| 4 | G | H | -1.1720 | |
| 5 | H | H | -0.2781 | |
| 6 | F | H | 1.6117 | |
| 7 | F | H | 2.1614 | |
| 1 | G | I | -1.1167 | |
| 2 | S | I | -1.4662 | |
| 3 | K | I | -2.3085 | |
| 4 | G | I | -1.2450 | |
| 5 | H | I | -0.1521 | |
| 6 | F | I | 0.0000 | |
| 7 | F | I | 3.3098 | |
| 1 | G | J | -1.0740 | |
| 2 | S | J | -1.3589 | |
| 3 | K | J | -1.9528 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | 0.3604 | |
| 6 | F | J | 2.4791 | |
| 7 | F | J | 1.7506 | |
| 1 | G | K | -1.3198 | |
| 2 | S | K | -1.4102 | |
| 3 | K | K | -2.0335 | |
| 4 | G | K | -1.1099 | |
| 5 | H | K | -0.8814 | |
| 6 | F | K | 1.6006 | |
| 7 | F | K | 1.5366 | |
| 1 | G | L | -1.4094 | |
| 2 | S | L | -1.9644 | |
| 3 | K | L | -2.4081 | |
| 4 | G | L | -1.2026 | |
| 5 | H | L | 0.1011 | |
| 6 | F | L | 2.6102 | |
| 7 | F | L | 3.4469 |