Project name: GSKGHFF12

Status: done

Started: 2026-02-20 09:10:28
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Chain sequence(s) A: GSKGHFF
C: GSKGHFF
B: GSKGHFF
E: GSKGHFF
D: GSKGHFF
G: GSKGHFF
F: GSKGHFF
I: GSKGHFF
H: GSKGHFF
K: GSKGHFF
J: GSKGHFF
L: GSKGHFF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:55)
Show buried residues

Minimal score value
-2.8459
Maximal score value
3.4469
Average score
-0.3589
Total score value
-30.146

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.2469
2 S A -1.5884
3 K A -2.5760
4 G A -1.8407
5 H A -1.8101
6 F A 0.0000
7 F A 1.5462
1 G B -1.8755
2 S B -2.4514
3 K B -2.7459
4 G B -1.4846
5 H B -0.3855
6 F B 2.5519
7 F B 3.1293
1 G C -1.6325
2 S C -1.7248
3 K C -2.8459
4 G C 0.0000
5 H C -0.1122
6 F C 1.3097
7 F C 0.5346
1 G D -1.0172
2 S D -1.2505
3 K D -1.8512
4 G D -0.4086
5 H D 0.3363
6 F D 2.1368
7 F D 0.0000
1 G E -1.1238
2 S E -1.6805
3 K E -2.2564
4 G E 0.0000
5 H E 0.0260
6 F E 2.2121
7 F E 1.8717
1 G F -0.9734
2 S F -1.1314
3 K F -1.5790
4 G F -0.4259
5 H F -0.2125
6 F F 2.0518
7 F F 2.3970
1 G G -0.8758
2 S G -1.4387
3 K G -1.6689
4 G G -0.8308
5 H G -0.2303
6 F G 1.4842
7 F G 1.7176
1 G H -1.0862
2 S H -1.6941
3 K H -2.5004
4 G H -1.1720
5 H H -0.2781
6 F H 1.6117
7 F H 2.1614
1 G I -1.1167
2 S I -1.4662
3 K I -2.3085
4 G I -1.2450
5 H I -0.1521
6 F I 0.0000
7 F I 3.3098
1 G J -1.0740
2 S J -1.3589
3 K J -1.9528
4 G J 0.0000
5 H J 0.3604
6 F J 2.4791
7 F J 1.7506
1 G K -1.3198
2 S K -1.4102
3 K K -2.0335
4 G K -1.1099
5 H K -0.8814
6 F K 1.6006
7 F K 1.5366
1 G L -1.4094
2 S L -1.9644
3 K L -2.4081
4 G L -1.2026
5 H L 0.1011
6 F L 2.6102
7 F L 3.4469
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Laboratory of Theory of Biopolymers 2018