Project name: Mutant2 [mutate: KE9A, KE17A]

Status: done

Started: 2021-07-13 14:55:47
Settings
Chain sequence(s) A: MEFVAKLFKFFKDLLGKFLGNN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues KE9A,KE17A
Energy difference between WT (input) and mutated protein (by FoldX) 0.571619 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:00:29)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:50)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:58)
[CRITICAL]   pyMol:    Pymol encountered an error: /bin/sh: pymol: command not found Movie         
                       creation failed.                                                            (00:00:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:59)
Show buried residues

Minimal score value
-2.0896
Maximal score value
1.7283
Average score
0.1506
Total score value
3.3142

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.8215
2 E A -0.4718
3 F A 1.5842
4 V A 1.3202
5 A A 0.0297
6 K A -0.7209
7 L A 1.1156
8 F A 1.5679
9 E A -0.8267 mutated: KE9A
10 F A 1.1272
11 F A 1.0105
12 K A -0.9409
13 D A -1.1615
14 L A 0.5936
15 L A 1.2471
16 G A -0.3863
17 E A -1.0958 mutated: KE17A
18 F A 1.7283
19 L A 1.3652
20 G A -0.4533
21 N A -2.0500
22 N A -2.0896
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Laboratory of Theory of Biopolymers 2018