Chain sequence(s) |
A: MEFVAKLFKFFKDLLGKFLGNN
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | KE9A,KE17A |
Energy difference between WT (input) and mutated protein (by FoldX) | 0.571619 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:01) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01) [INFO] runJob: Creating pdb object from: input.pdb (00:00:01) [INFO] FoldX: Starting FoldX energy minimalization (00:00:01) [INFO] FoldX: Building mutant model (00:00:29) [INFO] FoldX: Starting FoldX energy minimalization (00:00:50) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:58) [CRITICAL] pyMol: Pymol encountered an error: /bin/sh: pymol: command not found Movie creation failed. (00:00:58) [INFO] Main: Simulation completed successfully. (00:00:59) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | M | A | 0.8215 | |
2 | E | A | -0.4718 | |
3 | F | A | 1.5842 | |
4 | V | A | 1.3202 | |
5 | A | A | 0.0297 | |
6 | K | A | -0.7209 | |
7 | L | A | 1.1156 | |
8 | F | A | 1.5679 | |
9 | E | A | -0.8267 | mutated: KE9A |
10 | F | A | 1.1272 | |
11 | F | A | 1.0105 | |
12 | K | A | -0.9409 | |
13 | D | A | -1.1615 | |
14 | L | A | 0.5936 | |
15 | L | A | 1.2471 | |
16 | G | A | -0.3863 | |
17 | E | A | -1.0958 | mutated: KE17A |
18 | F | A | 1.7283 | |
19 | L | A | 1.3652 | |
20 | G | A | -0.4533 | |
21 | N | A | -2.0500 | |
22 | N | A | -2.0896 |