Project name: query_structure

Status: done

Started: 2026-03-17 00:24:25
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Chain sequence(s) A: QVQLQESGGGLVQAGGSLRLSCAASGYISDAYYMGWYRQAPGKEREFVATITHGTNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVAYATYAVFDPYFWYWGQGTQVTVSSLE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:33)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:34)
Show buried residues

Minimal score value
-3.2075
Maximal score value
2.9579
Average score
-0.4222
Total score value
-52.3548

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3041
2 V A -0.4470
3 Q A -1.6715
4 L A 0.0000
5 Q A -1.7630
6 E A 0.0000
7 S A -1.1101
8 G A -1.0222
9 G A -0.7791
10 G A -0.0363
11 L A 1.0519
12 V A 0.2074
13 Q A -1.0239
14 A A 0.0000
15 G A -1.0780
16 G A -0.8349
17 S A -1.1668
18 L A -0.8859
19 R A -2.1265
20 L A 0.0000
21 S A -0.8590
22 C A 0.0000
23 A A -1.0062
24 A A 0.0000
25 S A -0.7104
26 G A -0.1504
27 Y A 0.3828
28 I A 0.0000
29 S A -1.0294
30 D A -1.3288
31 A A 0.0000
32 Y A 0.5086
33 Y A 0.4581
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 Y A 0.0719
38 R A 0.0000
39 Q A -1.7381
40 A A -1.7921
41 P A -1.2819
42 G A -1.7941
43 K A -2.9242
44 E A -3.2075
45 R A -2.3090
46 E A -1.1211
47 F A 0.2163
48 V A 0.0000
49 A A 0.0000
50 T A 0.4838
51 I A 0.0000
52 T A 0.0000
53 H A -1.2867
54 G A -1.0745
55 T A -0.9672
56 N A -1.2949
57 T A -0.1005
58 Y A 0.7547
59 Y A -0.1211
60 A A -0.8926
61 D A -2.2391
62 S A -1.7523
63 V A 0.0000
64 K A -2.4641
65 G A -1.7889
66 R A -1.4907
67 F A 0.0000
68 T A -0.7147
69 I A 0.0000
70 S A -0.6077
71 R A -1.1456
72 D A -1.7079
73 N A -1.8869
74 A A -1.3100
75 K A -2.1191
76 N A -1.3079
77 T A 0.0000
78 V A 0.0000
79 Y A -0.6488
80 L A 0.0000
81 Q A -1.2339
82 M A 0.0000
83 N A -1.3684
84 S A -1.1684
85 L A 0.0000
86 K A -2.1621
87 P A -1.6052
88 E A -2.2714
89 D A 0.0000
90 T A -0.8349
91 A A 0.0000
92 V A -0.3888
93 Y A 0.0000
94 Y A -0.3437
95 C A 0.0000
96 A A 0.0000
97 V A 0.0000
98 A A 1.4194
99 Y A 1.1142
100 A A 1.2340
101 T A 1.3546
102 Y A 2.0189
103 A A 1.7462
104 V A 2.6958
105 F A 2.9124
106 D A 1.4151
107 P A 1.3272
108 Y A 2.3555
109 F A 2.9579
110 W A 2.1875
111 Y A 1.1702
112 W A 0.4852
113 G A -0.7555
114 Q A -1.5168
115 G A -0.9523
116 T A -1.0498
117 Q A -1.0873
118 V A 0.0000
119 T A -0.2252
120 V A 0.0000
121 S A -0.6227
122 S A -0.7689
123 L A 0.1854
124 E A -1.2918
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Laboratory of Theory of Biopolymers 2018