| Chain sequence(s) |
A: QVQLQESGGGLVQAGGSLRLSCAASGYISDAYYMGWYRQAPGKEREFVATITHGTNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVAYATYAVFDPYFWYWGQGTQVTVSSLE
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:33)
[INFO] Main: Simulation completed successfully. (00:01:34)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.3041 | |
| 2 | V | A | -0.4470 | |
| 3 | Q | A | -1.6715 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.7630 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.1101 | |
| 8 | G | A | -1.0222 | |
| 9 | G | A | -0.7791 | |
| 10 | G | A | -0.0363 | |
| 11 | L | A | 1.0519 | |
| 12 | V | A | 0.2074 | |
| 13 | Q | A | -1.0239 | |
| 14 | A | A | 0.0000 | |
| 15 | G | A | -1.0780 | |
| 16 | G | A | -0.8349 | |
| 17 | S | A | -1.1668 | |
| 18 | L | A | -0.8859 | |
| 19 | R | A | -2.1265 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.8590 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -1.0062 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7104 | |
| 26 | G | A | -0.1504 | |
| 27 | Y | A | 0.3828 | |
| 28 | I | A | 0.0000 | |
| 29 | S | A | -1.0294 | |
| 30 | D | A | -1.3288 | |
| 31 | A | A | 0.0000 | |
| 32 | Y | A | 0.5086 | |
| 33 | Y | A | 0.4581 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | 0.0719 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.7381 | |
| 40 | A | A | -1.7921 | |
| 41 | P | A | -1.2819 | |
| 42 | G | A | -1.7941 | |
| 43 | K | A | -2.9242 | |
| 44 | E | A | -3.2075 | |
| 45 | R | A | -2.3090 | |
| 46 | E | A | -1.1211 | |
| 47 | F | A | 0.2163 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | T | A | 0.4838 | |
| 51 | I | A | 0.0000 | |
| 52 | T | A | 0.0000 | |
| 53 | H | A | -1.2867 | |
| 54 | G | A | -1.0745 | |
| 55 | T | A | -0.9672 | |
| 56 | N | A | -1.2949 | |
| 57 | T | A | -0.1005 | |
| 58 | Y | A | 0.7547 | |
| 59 | Y | A | -0.1211 | |
| 60 | A | A | -0.8926 | |
| 61 | D | A | -2.2391 | |
| 62 | S | A | -1.7523 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.4641 | |
| 65 | G | A | -1.7889 | |
| 66 | R | A | -1.4907 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.7147 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.6077 | |
| 71 | R | A | -1.1456 | |
| 72 | D | A | -1.7079 | |
| 73 | N | A | -1.8869 | |
| 74 | A | A | -1.3100 | |
| 75 | K | A | -2.1191 | |
| 76 | N | A | -1.3079 | |
| 77 | T | A | 0.0000 | |
| 78 | V | A | 0.0000 | |
| 79 | Y | A | -0.6488 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.2339 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -1.3684 | |
| 84 | S | A | -1.1684 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -2.1621 | |
| 87 | P | A | -1.6052 | |
| 88 | E | A | -2.2714 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.8349 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | -0.3888 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.3437 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | V | A | 0.0000 | |
| 98 | A | A | 1.4194 | |
| 99 | Y | A | 1.1142 | |
| 100 | A | A | 1.2340 | |
| 101 | T | A | 1.3546 | |
| 102 | Y | A | 2.0189 | |
| 103 | A | A | 1.7462 | |
| 104 | V | A | 2.6958 | |
| 105 | F | A | 2.9124 | |
| 106 | D | A | 1.4151 | |
| 107 | P | A | 1.3272 | |
| 108 | Y | A | 2.3555 | |
| 109 | F | A | 2.9579 | |
| 110 | W | A | 2.1875 | |
| 111 | Y | A | 1.1702 | |
| 112 | W | A | 0.4852 | |
| 113 | G | A | -0.7555 | |
| 114 | Q | A | -1.5168 | |
| 115 | G | A | -0.9523 | |
| 116 | T | A | -1.0498 | |
| 117 | Q | A | -1.0873 | |
| 118 | V | A | 0.0000 | |
| 119 | T | A | -0.2252 | |
| 120 | V | A | 0.0000 | |
| 121 | S | A | -0.6227 | |
| 122 | S | A | -0.7689 | |
| 123 | L | A | 0.1854 | |
| 124 | E | A | -1.2918 |