| Chain sequence(s) |
A: FSKGHGG
C: FSKGHGG B: FSKGHGG E: FSKGHGG D: FSKGHGG G: FSKGHGG F: FSKGHGG I: FSKGHGG H: FSKGHGG K: FSKGHGG J: FSKGHGG M: FSKGHGG L: FSKGHGG O: FSKGHGG N: FSKGHGG Q: FSKGHGG P: FSKGHGG S: FSKGHGG R: FSKGHGG T: FSKGHGG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:08:43)
[INFO] Main: Simulation completed successfully. (00:08:48)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 1.1975 | |
| 2 | S | A | -0.3888 | |
| 3 | K | A | -1.8236 | |
| 4 | G | A | -2.1049 | |
| 5 | H | A | -1.4876 | |
| 6 | G | A | -0.3803 | |
| 7 | G | A | -0.6089 | |
| 1 | F | B | 2.2947 | |
| 2 | S | B | 0.1753 | |
| 3 | K | B | -1.8325 | |
| 4 | G | B | -2.6355 | |
| 5 | H | B | -2.1550 | |
| 6 | G | B | -1.3844 | |
| 7 | G | B | -1.2301 | |
| 1 | F | C | 1.9797 | |
| 2 | S | C | 0.1370 | |
| 3 | K | C | -2.0746 | |
| 4 | G | C | -2.5688 | |
| 5 | H | C | -2.4771 | |
| 6 | G | C | -1.8007 | |
| 7 | G | C | -1.2636 | |
| 1 | F | D | 1.4948 | |
| 2 | S | D | -0.4731 | |
| 3 | K | D | -2.2405 | |
| 4 | G | D | -2.5266 | |
| 5 | H | D | -1.7922 | |
| 6 | G | D | -0.1142 | |
| 7 | G | D | -0.2910 | |
| 1 | F | E | 1.8626 | |
| 2 | S | E | 0.0000 | |
| 3 | K | E | -1.8151 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | -1.6967 | |
| 6 | G | E | 0.0000 | |
| 7 | G | E | -0.3821 | |
| 1 | F | F | 1.1663 | |
| 2 | S | F | 0.0000 | |
| 3 | K | F | -1.2912 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -1.1436 | |
| 6 | G | F | -0.0412 | |
| 7 | G | F | -0.3193 | |
| 1 | F | G | 0.7405 | |
| 2 | S | G | 0.0000 | |
| 3 | K | G | -1.5222 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | -1.4596 | |
| 6 | G | G | 0.0000 | |
| 7 | G | G | -0.4141 | |
| 1 | F | H | 0.6848 | |
| 2 | S | H | 0.0000 | |
| 3 | K | H | -1.7251 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | -1.4459 | |
| 6 | G | H | 0.0000 | |
| 7 | G | H | -0.4153 | |
| 1 | F | I | 1.2539 | |
| 2 | S | I | 0.0000 | |
| 3 | K | I | -1.8565 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | -1.5983 | |
| 6 | G | I | 0.0000 | |
| 7 | G | I | -0.3192 | |
| 1 | F | J | 1.1505 | |
| 2 | S | J | 0.0000 | |
| 3 | K | J | -1.8447 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | -1.4450 | |
| 6 | G | J | 0.0000 | |
| 7 | G | J | -0.2241 | |
| 1 | F | K | 1.0917 | |
| 2 | S | K | 0.0000 | |
| 3 | K | K | -2.5908 | |
| 4 | G | K | 0.0000 | |
| 5 | H | K | -1.6159 | |
| 6 | G | K | 0.0000 | |
| 7 | G | K | -0.0742 | |
| 1 | F | L | 1.5064 | |
| 2 | S | L | -0.5483 | |
| 3 | K | L | -2.3533 | |
| 4 | G | L | -2.2027 | |
| 5 | H | L | -1.8726 | |
| 6 | G | L | -0.4984 | |
| 7 | G | L | -0.4133 | |
| 1 | F | M | 1.2064 | |
| 2 | S | M | 0.0000 | |
| 3 | K | M | -2.1930 | |
| 4 | G | M | 0.0000 | |
| 5 | H | M | -1.8343 | |
| 6 | G | M | 0.0000 | |
| 7 | G | M | -0.5162 | |
| 1 | F | N | 1.0631 | |
| 2 | S | N | 0.0000 | |
| 3 | K | N | -2.0630 | |
| 4 | G | N | 0.0000 | |
| 5 | H | N | -1.2452 | |
| 6 | G | N | 0.0000 | |
| 7 | G | N | -0.3566 | |
| 1 | F | O | 1.2396 | |
| 2 | S | O | 0.0000 | |
| 3 | K | O | -1.8690 | |
| 4 | G | O | 0.0000 | |
| 5 | H | O | -1.3428 | |
| 6 | G | O | 0.0000 | |
| 7 | G | O | -0.5200 | |
| 1 | F | P | 0.9207 | |
| 2 | S | P | 0.0000 | |
| 3 | K | P | -1.9134 | |
| 4 | G | P | 0.0000 | |
| 5 | H | P | -1.4392 | |
| 6 | G | P | 0.0000 | |
| 7 | G | P | -0.6384 | |
| 1 | F | Q | 1.2686 | |
| 2 | S | Q | 0.0000 | |
| 3 | K | Q | -1.8136 | |
| 4 | G | Q | 0.0000 | |
| 5 | H | Q | -1.4256 | |
| 6 | G | Q | 0.0000 | |
| 7 | G | Q | -0.6686 | |
| 1 | F | R | 1.3473 | |
| 2 | S | R | 0.0000 | |
| 3 | K | R | -1.3744 | |
| 4 | G | R | 0.0000 | |
| 5 | H | R | -1.0018 | |
| 6 | G | R | 0.0000 | |
| 7 | G | R | -0.4284 | |
| 1 | F | S | 1.4056 | |
| 2 | S | S | 0.0000 | |
| 3 | K | S | -1.4266 | |
| 4 | G | S | 0.0000 | |
| 5 | H | S | -1.0213 | |
| 6 | G | S | 0.0000 | |
| 7 | G | S | -0.1694 | |
| 1 | F | T | 1.3848 | |
| 2 | S | T | 0.0000 | |
| 3 | K | T | -2.0279 | |
| 4 | G | T | 0.0000 | |
| 5 | H | T | -1.1600 | |
| 6 | G | T | 0.0000 | |
| 7 | G | T | -0.1296 |