| Chain sequence(s) |
A: GKGHKGH
C: GKGHKGH B: GKGHKGH D: GKGHKGH input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:19)
[INFO] Main: Simulation completed successfully. (00:05:20)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -3.1388 | |
| 2 | K | A | -3.5009 | |
| 3 | G | A | 0.0000 | |
| 4 | H | A | -4.2818 | |
| 5 | K | A | -4.8141 | |
| 6 | G | A | 0.0000 | |
| 7 | H | A | -3.5103 | |
| 1 | G | B | -1.8919 | |
| 2 | K | B | -3.4807 | |
| 3 | G | B | -3.0534 | |
| 4 | H | B | 0.0000 | |
| 5 | K | B | -4.3694 | |
| 6 | G | B | 0.0000 | |
| 7 | H | B | -3.4716 | |
| 1 | G | C | -3.0403 | |
| 2 | K | C | -4.1040 | |
| 3 | G | C | 0.0000 | |
| 4 | H | C | -4.2632 | |
| 5 | K | C | -4.6206 | |
| 6 | G | C | 0.0000 | |
| 7 | H | C | -4.4221 | |
| 1 | G | D | -2.7105 | |
| 2 | K | D | -4.3058 | |
| 3 | G | D | -3.4481 | |
| 4 | H | D | -4.5469 | |
| 5 | K | D | -4.3787 | |
| 6 | G | D | -4.0710 | |
| 7 | H | D | -4.4381 |