Project name: query_structure

Status: done

Started: 2026-03-17 00:38:06
Settings
Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVDYWEMHWYRQAPGKEREWVAAIYSKGEETKYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDWSGSELWWYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:54)
Show buried residues

Minimal score value
-3.7372
Maximal score value
1.8929
Average score
-0.8143
Total score value
-98.5348

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3985
2 V A -0.6366
3 Q A -0.6825
4 L A 0.0000
5 V A 0.9038
6 E A 0.0000
7 S A -0.6526
8 G A -1.0666
9 G A -0.8424
10 G A -0.0788
11 L A 0.9210
12 V A 0.0000
13 Q A -1.2931
14 A A -1.4623
15 G A -1.4016
16 G A -0.9934
17 S A -1.4363
18 L A -1.1210
19 R A -2.3538
20 L A 0.0000
21 S A -0.5251
22 C A 0.0000
23 A A -0.1427
24 A A 0.0000
25 S A -0.6271
26 G A -1.0100
27 F A 0.0000
28 P A -0.4906
29 V A 0.0000
30 D A -0.7103
31 Y A 0.3506
32 W A -0.0000
33 E A 0.0000
34 M A 0.0000
35 H A 0.0000
36 W A 0.0000
37 Y A -0.7916
38 R A -1.6266
39 Q A -2.3603
40 A A -2.1806
41 P A -1.4200
42 G A -1.9393
43 K A -3.4891
44 E A -3.7372
45 R A -3.0561
46 E A -2.8796
47 W A -1.1849
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 Y A -1.2771
53 S A -1.2199
54 K A -2.3452
55 G A -2.4348
56 E A -3.1809
57 E A -2.9281
58 T A -1.6069
59 K A -1.6033
60 Y A -1.3287
61 A A -1.7251
62 D A -2.5678
63 S A -1.8153
64 V A 0.0000
65 K A -2.7816
66 G A -1.8743
67 R A -1.7380
68 F A 0.0000
69 T A -1.2041
70 I A 0.0000
71 S A -0.6423
72 R A -1.2463
73 D A -1.8715
74 N A -1.9186
75 A A -1.5882
76 K A -2.3441
77 N A -1.8314
78 T A 0.0000
79 V A 0.0000
80 Y A 0.0000
81 L A 0.0000
82 Q A -1.6975
83 M A 0.0000
84 N A -1.9557
85 S A -1.3766
86 L A 0.0000
87 K A -2.3230
88 P A -1.9107
89 E A -2.3336
90 D A 0.0000
91 T A -0.9886
92 A A 0.0000
93 V A -0.5835
94 Y A 0.0000
95 Y A -0.3263
96 C A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -0.5578
100 D A -0.4906
101 W A 0.3468
102 S A -0.2013
103 G A -0.7512
104 S A -0.7437
105 E A -0.8752
106 L A 1.4057
107 W A 1.8929
108 W A 1.6339
109 Y A 1.1627
110 D A -0.1996
111 Y A 0.0833
112 W A 0.1379
113 G A -0.1588
114 Q A -0.9285
115 G A 0.0000
116 T A 0.0000
117 Q A -1.1725
118 V A 0.0000
119 T A -0.3429
120 V A 0.0000
121 S A -0.7917
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Laboratory of Theory of Biopolymers 2018