Project name: Lad-XTEN-SnapTag

Status: done

Started: 2025-06-30 20:50:26
Settings
Chain sequence(s) A: QVQLVQSGAEVKKPGASVKVSCKASGLTIEDYYMHWVRQAPGQGLEWMGWIDPENGDTEYGPKFQGRVTMTRDTSINTAYMELSRLRSDDTAVYYCAVHNAHYGTWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCSSGSETPGTSESATPESDKDCEMKRTTLDSPLGKLELSGCEQGLHEIIFLGKGTSAADAVEVPAPAAVLGGPEPLMQATAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPCHRVVQGDLDVGGYEGGLAVKEWLLAHEGHRLGKPGLG
B: DVVMTQSPLSLPVTLGQPASISCRSSQSLLHSSGNTYLEWYQQRPGQSPRPLIYKISTRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHVPYTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:11:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:11:10)
Show buried residues

Minimal score value
-4.2756
Maximal score value
1.5744
Average score
-0.7307
Total score value
-467.671

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5515
2 V A -1.0577
3 Q A -1.4500
4 L A 0.0000
5 V A 0.1159
6 Q A 0.0000
7 S A -0.5551
8 G A -0.5356
9 A A -0.1898
10 E A -0.5447
11 V A -0.0800
12 K A -1.3389
13 K A -2.4639
14 P A -2.3747
15 G A -1.9986
16 A A -1.5431
17 S A -1.6915
18 V A 0.0000
19 K A -1.9612
20 V A 0.0000
21 S A -0.6202
22 C A 0.0000
23 K A -0.6874
24 A A 0.0000
25 S A -0.8113
26 G A -1.0723
27 L A -0.8715
28 T A -0.8827
29 I A 0.0000
30 E A -2.8275
31 D A -2.5709
32 Y A -1.2287
33 Y A -0.5395
34 M A 0.0000
35 H A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A -0.4043
39 Q A -0.6608
40 A A -1.0113
41 P A -0.9956
42 G A -1.2126
43 Q A -1.7491
44 G A -1.1208
45 L A 0.0000
46 E A -0.7114
47 W A 0.0000
48 M A 0.0000
49 G A 0.0000
50 W A -0.2530
51 I A 0.0000
52 D A -2.1580
53 P A 0.0000
54 E A -3.6505
55 N A -3.0127
56 G A -2.4631
57 D A -2.6521
58 T A -1.2770
59 E A -0.8680
60 Y A -0.6591
61 G A 0.0000
62 P A -1.6349
63 K A -2.2330
64 F A 0.0000
65 Q A -2.0943
66 G A -1.5999
67 R A -1.5767
68 V A 0.0000
69 T A -0.7427
70 M A 0.0000
71 T A -0.7937
72 R A -1.4492
73 D A -1.0265
74 T A -0.7345
75 S A 0.3480
76 I A 1.2693
77 N A -0.1068
78 T A 0.0000
79 A A 0.0000
80 Y A -0.7690
81 M A 0.0000
82 E A -1.2476
83 L A 0.0000
84 S A -1.7652
85 R A -2.7080
86 L A 0.0000
87 R A -3.3717
88 S A -2.3283
89 D A -2.5372
90 D A 0.0000
91 T A -0.8888
92 A A 0.0000
93 V A 0.2438
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 V A 0.0000
99 H A 0.0000
100 N A 0.0000
101 A A -0.1658
102 H A -0.5490
103 Y A 0.7965
104 G A 0.2080
105 T A 0.0000
106 W A 0.0000
107 F A 0.0000
108 A A 0.0738
109 Y A -0.0092
110 W A -0.2121
111 G A 0.0000
112 Q A -1.2803
113 G A -0.5160
114 T A 0.0000
115 L A 0.1994
116 V A 0.0000
117 T A 0.0000
118 V A 0.0000
119 S A -1.2564
120 S A -0.9205
121 A A -0.5862
122 S A -0.6448
123 T A -0.5706
124 K A -1.1748
125 G A -1.3261
126 P A 0.0000
127 S A -0.4000
128 V A 0.0000
129 F A 0.0000
130 P A -1.2680
131 L A 0.0000
132 A A -1.2313
133 P A 0.0000
134 S A -0.9715
135 S A -0.6429
136 K A -1.1649
137 S A 0.0000
138 T A -0.7156
139 S A -0.6998
140 G A -0.7835
141 G A -1.0367
142 T A -0.5507
143 A A 0.0000
144 A A 0.0000
145 L A 0.0000
146 G A 0.0000
147 C A 0.0000
148 L A 0.0000
149 V A 0.0000
150 K A 0.0000
151 D A -0.3443
152 Y A 0.0000
153 F A 0.0000
154 P A 0.0000
155 E A -0.4309
156 P A -0.6874
157 V A -0.6503
158 T A -0.5450
159 V A -0.1122
160 S A -0.3398
161 W A 0.0000
162 N A -0.7135
163 S A -0.6255
164 G A -0.4938
165 A A -0.2225
166 L A 0.0280
167 T A -0.1489
168 S A -0.1564
169 G A -0.1736
170 V A 0.2042
171 H A -0.3125
172 T A 0.0257
173 F A 0.0000
174 P A -0.3305
175 A A 0.2267
176 V A 0.5606
177 L A 1.2206
178 Q A 0.3240
179 S A -0.0340
180 S A -0.1661
181 G A 0.0616
182 L A 0.1418
183 Y A 0.4350
184 S A 0.0000
185 L A 0.0000
186 S A 0.0000
187 S A 0.0000
188 V A 0.0000
189 V A 0.0000
190 T A -0.1017
191 V A 0.0000
192 P A -0.3730
193 S A -0.4749
194 S A -0.8466
195 S A -0.2318
196 L A -0.5545
197 G A -0.9929
198 T A 0.0000
199 Q A -0.5273
200 T A -0.7750
201 Y A 0.0000
202 I A -1.1692
203 C A 0.0000
204 N A -1.3653
205 V A 0.0000
206 N A -1.8135
207 H A 0.0000
208 K A -2.7242
209 P A -1.5599
210 S A -1.8175
211 N A -2.5666
212 T A -2.0356
213 K A -2.6015
214 V A -1.4484
215 D A -2.2086
216 K A -1.9819
217 K A -2.4511
218 V A 0.0000
219 E A -2.8078
220 P A -1.8018
221 K A -2.2162
222 S A -0.9473
223 C A -0.2124
224 S A -0.3602
225 S A -0.6670
226 G A -1.2171
227 S A -1.4724
228 E A -2.2796
229 T A -1.3743
230 P A -1.1437
231 G A -1.2642
232 T A -1.0800
233 S A -1.3447
234 E A -2.1195
235 S A -1.2131
236 A A -1.1285
237 T A -1.2420
238 P A -1.9157
239 E A -3.2686
240 S A -3.0800
241 D A -3.9747
242 K A -4.2756
243 D A -3.8791
244 C A -3.0323
245 E A -2.8808
246 M A -1.9986
247 K A -2.6512
248 R A -2.5259
249 T A -1.2296
250 T A -0.7628
251 L A 0.0000
252 D A -1.7197
253 S A 0.0000
254 P A -0.7226
255 L A 0.0000
256 G A -1.1017
257 K A -1.4094
258 L A 0.0000
259 E A -0.5433
260 L A 0.0000
261 S A -1.2256
262 G A 0.0000
263 C A 0.0000
264 E A -3.0440
265 Q A -2.4877
266 G A 0.0000
267 L A 0.0000
268 H A -0.8715
269 E A -0.7297
270 I A 0.0000
271 I A 0.8867
272 F A 0.4930
273 L A 0.3166
274 G A -0.9454
275 K A -1.8390
276 G A -0.9951
277 T A -1.1840
278 S A -0.9228
279 A A -0.7170
280 A A -0.6053
281 D A -1.5138
282 A A -0.4370
283 V A 0.3832
284 E A -1.1393
285 V A -0.5630
286 P A -0.6247
287 A A -0.6635
288 P A -0.2390
289 A A 0.3941
290 A A 0.7530
291 V A 1.1758
292 L A 1.5744
293 G A 0.0423
294 G A -1.2738
295 P A 0.0000
296 E A -2.4718
297 P A 0.0000
298 L A 0.0000
299 M A -0.2365
300 Q A -0.3090
301 A A 0.0000
302 T A 0.0000
303 A A 0.2384
304 W A 0.0000
305 L A 0.0000
306 N A -0.5459
307 A A 0.0000
308 Y A 0.0000
309 F A 0.0000
310 H A -1.2273
311 Q A -1.6895
312 P A -1.8392
313 E A -2.6098
314 A A -2.1187
315 I A -1.8853
316 E A -2.7360
317 E A -2.5263
318 F A -0.7497
319 P A -0.4040
320 V A 0.2793
321 P A 0.0000
322 A A 0.0000
323 L A 0.0000
324 H A -0.9892
325 H A -0.8078
326 P A -1.2280
327 V A -0.9852
328 F A 0.0000
329 Q A -1.9833
330 Q A -2.4806
331 E A -2.5974
332 S A -1.2400
333 F A -0.4044
334 T A -0.6326
335 R A -1.1092
336 Q A -0.7103
337 V A 0.0000
338 L A 0.0000
339 W A -0.5487
340 K A -0.7957
341 L A 0.0000
342 L A -0.6144
343 K A -1.5313
344 V A -0.3525
345 V A 0.0000
346 K A -1.4401
347 F A -0.9019
348 G A -1.1649
349 E A -1.3890
350 V A -0.5109
351 I A 0.0000
352 S A -1.0559
353 Y A 0.0000
354 S A -1.0526
355 H A -1.1472
356 L A 0.0000
357 A A 0.0000
358 A A -0.8189
359 L A -0.2526
360 A A -0.6701
361 G A -1.0261
362 N A -1.5430
363 P A -1.0933
364 A A -0.6409
365 A A -0.5792
366 T A -0.7439
367 A A -0.2922
368 A A -0.3475
369 V A 0.0000
370 K A -1.3143
371 T A -0.6875
372 A A 0.0000
373 L A 0.0000
374 S A -1.3266
375 G A -1.0119
376 N A -0.7822
377 P A -0.3442
378 V A 0.0000
379 P A -0.2936
380 I A 0.0000
381 L A 0.0000
382 I A 0.0000
383 P A 0.0000
384 C A 0.0000
385 H A 0.0000
386 R A 0.0000
387 V A 0.0000
388 V A 0.0000
389 Q A -1.6208
390 G A -1.4137
391 D A -1.8010
392 L A -0.3655
393 D A -1.5269
394 V A -0.7843
395 G A -0.7901
396 G A -1.1485
397 Y A -1.1006
398 E A -2.1553
399 G A -1.1648
400 G A -0.7420
401 L A 0.0046
402 A A -0.0740
403 V A 0.0000
404 K A 0.0000
405 E A -1.1557
406 W A -0.6157
407 L A 0.0000
408 L A 0.0000
409 A A -1.4814
410 H A -0.7076
411 E A 0.0000
412 G A -1.4397
413 H A -1.8387
414 R A -2.6713
415 L A -1.7184
416 G A 0.0000
417 K A -2.5236
418 P A -1.3212
419 G A -0.6106
420 L A 0.7743
421 G A 0.1108
1 D B -1.2869
2 V B 0.0000
3 V B 0.7234
4 M B 0.0000
5 T B -0.4242
6 Q B 0.0000
7 S B -0.2313
8 P B 0.3131
9 L B 1.0604
10 S B 0.1565
11 L B -0.0503
12 P B -0.5603
13 V B 0.0000
14 T B -0.7192
15 L B -0.2031
16 G B -1.1193
17 Q B -1.7268
18 P B -1.8168
19 A B 0.0000
20 S B -0.7239
21 I B 0.0000
22 S B -0.9355
23 C B 0.0000
24 R B -2.3229
25 S B 0.0000
26 S B -0.8791
27 Q B -1.1613
28 S B -0.6155
29 L B 0.0000
30 L B 0.8216
31 H B -0.1353
32 S B -0.3869
33 S B -0.5482
34 G B -0.5733
35 N B -0.5413
36 T B 0.0000
37 Y B 0.0429
38 L B 0.0000
39 E B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 Q B 0.0000
43 Q B 0.0000
44 R B -2.3815
45 P B -1.6561
46 G B -1.7699
47 Q B -2.3020
48 S B -1.5275
49 P B 0.0000
50 R B -1.4063
51 P B -0.6607
52 L B 0.0000
53 I B 0.0000
54 Y B -0.1151
55 K B -0.4432
56 I B -0.3794
57 S B -0.5580
58 T B -0.6849
59 R B -1.4949
60 F B 0.0000
61 S B -0.6983
62 G B -0.9731
63 V B 0.0000
64 P B -1.3169
65 D B -2.3892
66 R B -2.0301
67 F B 0.0000
68 S B -1.2674
69 G B 0.0000
70 S B -0.8133
71 G B -1.0480
72 S B -0.6911
73 G B -0.5986
74 T B -1.4147
75 D B -2.2258
76 F B 0.0000
77 T B -1.0712
78 L B 0.0000
79 K B -1.6919
80 I B 0.0000
81 S B -2.2405
82 R B -2.8765
83 V B 0.0000
84 E B -1.9332
85 A B -1.5151
86 E B -2.3307
87 D B 0.0000
88 V B -1.3900
89 G B 0.0000
90 V B -0.3661
91 Y B 0.0000
92 Y B 0.0000
93 C B 0.0000
94 F B 0.0000
95 Q B 0.0000
96 G B 0.0000
97 S B 0.0000
98 H B -0.0143
99 V B 0.5431
100 P B -0.1848
101 Y B 0.2965
102 T B 0.0847
103 F B 0.0000
104 G B 0.0000
105 G B -0.3843
106 G B 0.0000
107 T B 0.0000
108 K B -0.7611
109 V B 0.0000
110 E B -0.7562
111 I B 0.0000
112 K B -0.8215
113 R B -0.6950
114 T B -0.0045
115 V B 0.4314
116 A B -0.0192
117 A B -0.0948
118 P B 0.0000
119 S B -0.1917
120 V B 0.0000
121 F B 0.0000
122 I B 0.0000
123 F B 0.0000
124 P B -0.6942
125 P B -0.7555
126 S B -1.7432
127 D B -2.9756
128 E B -2.8045
129 Q B 0.0000
130 L B -2.2029
131 K B -2.7871
132 S B -1.7303
133 G B -1.2433
134 T B -0.9803
135 A B 0.0000
136 S B 0.0000
137 V B 0.0000
138 V B 0.0000
139 C B 0.0000
140 L B 0.0000
141 L B 0.0000
142 N B 0.0000
143 N B -0.8756
144 F B 0.0000
145 Y B 0.0000
146 P B -1.6378
147 R B -2.9474
148 E B -3.1955
149 A B -2.3366
150 K B -2.4670
151 V B -1.0977
152 Q B -0.6398
153 W B 0.0000
154 K B -0.5239
155 V B 0.0000
156 D B -1.7331
157 N B -1.4397
158 A B -0.2357
159 L B 0.7054
160 Q B -0.2583
161 S B -0.6169
162 G B -1.2172
163 N B -1.4834
164 S B -1.3251
165 Q B -1.2350
166 E B -1.3886
167 S B -0.7865
168 V B -0.7729
169 T B -1.2079
170 E B -2.2659
171 Q B 0.0000
172 D B -1.9447
173 S B -1.9906
174 K B -2.1924
175 D B -1.6281
176 S B -1.6240
177 T B 0.0000
178 Y B 0.0000
179 S B 0.0000
180 L B 0.0000
181 S B 0.0000
182 S B 0.0000
183 T B -0.6201
184 L B 0.0000
185 T B -0.5935
186 L B -0.7147
187 S B -0.9357
188 K B -1.9212
189 A B -1.6932
190 D B -2.2582
191 Y B 0.0000
192 E B -3.0893
193 K B -3.3278
194 H B -2.5813
195 K B -2.5780
196 V B -0.9750
197 Y B 0.0000
198 A B 0.0000
199 C B 0.0000
200 E B -0.6594
201 V B 0.0000
202 T B -1.2306
203 H B 0.0000
204 Q B -1.7495
205 G B -0.4137
206 L B -0.2314
207 S B -0.4562
208 S B -0.4107
209 P B -0.5539
210 V B 0.1009
211 T B -0.3651
212 K B -0.7472
213 S B -0.6047
214 F B 0.0000
215 N B -1.4846
216 R B -1.9808
217 G B -1.6572
218 E B -1.9460
219 C B -0.8004
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Laboratory of Theory of Biopolymers 2018