| Chain sequence(s) |
A: FFGHKGF
C: FFGHKGF B: FFGHKGF E: FFGHKGF D: FFGHKGF G: FFGHKGF F: FFGHKGF I: FFGHKGF H: FFGHKGF K: FFGHKGF J: FFGHKGF L: FFGHKGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:32)
[INFO] Main: Simulation completed successfully. (00:03:34)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.3461 | |
| 2 | F | A | 2.0525 | |
| 3 | G | A | 0.2765 | |
| 4 | H | A | -0.2955 | |
| 5 | K | A | -0.6285 | |
| 6 | G | A | 1.2206 | |
| 7 | F | A | 3.4476 | |
| 1 | F | B | 2.4703 | |
| 2 | F | B | 2.0301 | |
| 3 | G | B | 0.1206 | |
| 4 | H | B | -0.2887 | |
| 5 | K | B | -0.7951 | |
| 6 | G | B | 0.7915 | |
| 7 | F | B | 3.0225 | |
| 1 | F | C | 3.5281 | |
| 2 | F | C | 2.7685 | |
| 3 | G | C | 0.1319 | |
| 4 | H | C | -0.6670 | |
| 5 | K | C | -1.3093 | |
| 6 | G | C | 0.0211 | |
| 7 | F | C | 2.2238 | |
| 1 | F | D | 3.3309 | |
| 2 | F | D | 3.0048 | |
| 3 | G | D | 0.3127 | |
| 4 | H | D | -1.0546 | |
| 5 | K | D | -1.1801 | |
| 6 | G | D | 0.1212 | |
| 7 | F | D | 2.1044 | |
| 1 | F | E | 3.0195 | |
| 2 | F | E | 2.6748 | |
| 3 | G | E | 0.1657 | |
| 4 | H | E | -0.8829 | |
| 5 | K | E | -0.6977 | |
| 6 | G | E | 0.7354 | |
| 7 | F | E | 2.8089 | |
| 1 | F | F | 2.4648 | |
| 2 | F | F | 2.2973 | |
| 3 | G | F | -0.0112 | |
| 4 | H | F | -0.3844 | |
| 5 | K | F | -0.5847 | |
| 6 | G | F | 1.2259 | |
| 7 | F | F | 3.3440 | |
| 1 | F | G | 2.1086 | |
| 2 | F | G | 1.7671 | |
| 3 | G | G | -0.0282 | |
| 4 | H | G | -0.2128 | |
| 5 | K | G | -0.2599 | |
| 6 | G | G | 1.3795 | |
| 7 | F | G | 3.4151 | |
| 1 | F | H | 2.6373 | |
| 2 | F | H | 2.0055 | |
| 3 | G | H | -0.1804 | |
| 4 | H | H | -0.5811 | |
| 5 | K | H | -0.5519 | |
| 6 | G | H | 1.0909 | |
| 7 | F | H | 3.3639 | |
| 1 | F | I | 2.8065 | |
| 2 | F | I | 2.4922 | |
| 3 | G | I | -0.1762 | |
| 4 | H | I | -1.2805 | |
| 5 | K | I | -1.0956 | |
| 6 | G | I | 0.4514 | |
| 7 | F | I | 2.8193 | |
| 1 | F | J | 3.2582 | |
| 2 | F | J | 3.1702 | |
| 3 | G | J | 0.0331 | |
| 4 | H | J | -1.5087 | |
| 5 | K | J | -1.7178 | |
| 6 | G | J | -0.3387 | |
| 7 | F | J | 1.9343 | |
| 1 | F | K | 3.7308 | |
| 2 | F | K | 3.5423 | |
| 3 | G | K | 0.4602 | |
| 4 | H | K | -0.5989 | |
| 5 | K | K | -1.0388 | |
| 6 | G | K | 0.2743 | |
| 7 | F | K | 2.1972 | |
| 1 | F | L | 2.8604 | |
| 2 | F | L | 2.4261 | |
| 3 | G | L | 0.4570 | |
| 4 | H | L | -0.0455 | |
| 5 | K | L | -0.3102 | |
| 6 | G | L | 0.9905 | |
| 7 | F | L | 2.9328 |