Project name: obj1 [mutate: LG18C, SM21C, VF118C, SW120C]

Status: done

Started: 2025-02-10 14:40:55
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Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues SM21C,LG18C,SW120C,VF118C
Energy difference between WT (input) and mutated protein (by FoldX) 10.3648 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:24)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:45)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:09)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:10)
Show buried residues

Minimal score value
-3.3333
Maximal score value
1.6805
Average score
-0.6247
Total score value
-74.9625

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0063
2 V C -0.9165
3 Q C -1.2622
4 L C 0.0000
5 V C 0.5584
6 E C 0.2600
7 S C -0.3375
8 G C -0.9112
9 G C -0.2575
10 G C 0.7201
11 L C 1.3689
12 V C 0.1023
13 Q C -0.9968
14 P C -1.0927
15 G C -1.3728
16 G C -0.9802
17 S C -1.3426
18 G C -1.2962 mutated: LG18C
19 R C -2.2856
20 L C 0.0000
21 M C -0.3212 mutated: SM21C
22 C C 0.0000
23 A C -0.1809
24 A C 0.0000
25 S C -0.2151
26 D C 0.0000
27 F C 1.5458
28 T C 0.2527
29 F C 0.0000
30 R C -2.0319
31 S C -0.8861
32 Y C -1.2160
33 E C -1.1454
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.2986
40 A C -0.9863
41 P C -1.2936
42 G C -1.4347
43 K C -2.1362
44 G C -1.0612
45 L C 0.3908
46 E C -0.3994
47 W C 0.3362
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5832
53 G C -1.2444
54 S C -1.2283
55 G C -1.0815
56 G C -0.7345
57 S C -0.3026
58 T C 0.1984
59 Y C 0.6071
60 Y C -0.3573
61 A C -1.1408
62 D C -2.3454
63 S C -1.7169
64 V C 0.0000
65 K C -2.3855
66 G C -1.6178
67 R C 0.0000
68 F C 0.0000
69 T C -0.6947
70 I C 0.0000
71 S C -0.5775
72 R C -1.3668
73 D C -2.0011
74 N C -2.1883
75 S C -1.7897
76 K C -2.3192
77 N C -1.6541
78 T C 0.0000
79 L C 0.0000
80 Y C 0.0000
81 L C 0.0000
82 Q C -1.3076
83 M C 0.0000
84 N C -1.3902
85 S C -1.2501
86 L C 0.0000
87 R C -2.1723
88 A C -1.3931
89 E C -2.1478
90 D C 0.0000
91 T C -0.2786
92 A C 0.0000
93 I C 1.0382
94 Y C 0.0000
95 Y C 0.6367
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.1907
101 D C -3.3333
102 G C -2.0866
103 F C -1.2310
104 N C -2.4286
105 K C -3.1848
106 G C -1.9076
107 F C -0.9859
108 D C -1.0994
109 Y C -0.2104
110 W C 0.5480
111 G C -0.0929
112 Q C -0.8885
113 G C 0.0806
114 T C 0.5453
115 L C 1.6805
116 V C 0.0000
117 T C 0.4514
118 F C 0.0000 mutated: VF118C
119 S C -0.0701
120 W C 0.3599 mutated: SW120C
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Laboratory of Theory of Biopolymers 2018