| Chain sequence(s) |
A: GSIPCGESCVWIPCISSVVGCACKNKVCYKN
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:24)
[INFO] Main: Simulation completed successfully. (00:00:24)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.0825 | |
| 2 | S | A | 0.0159 | |
| 3 | I | A | 1.1597 | |
| 4 | P | A | 0.3052 | |
| 5 | C | A | 0.4614 | |
| 6 | G | A | -0.3078 | |
| 7 | E | A | 0.1694 | |
| 8 | S | A | 0.2648 | |
| 9 | C | A | 0.8935 | |
| 10 | V | A | 1.1609 | |
| 11 | W | A | 2.2227 | |
| 12 | I | A | 2.7857 | |
| 13 | P | A | 1.6382 | |
| 14 | C | A | 0.0000 | |
| 15 | I | A | 2.8569 | |
| 16 | S | A | 1.9276 | |
| 17 | S | A | 1.7969 | |
| 18 | V | A | 2.9594 | |
| 19 | V | A | 2.6485 | |
| 20 | G | A | 0.8730 | |
| 21 | C | A | 0.0000 | |
| 22 | A | A | -0.1228 | |
| 23 | C | A | -0.3873 | |
| 24 | K | A | -1.5358 | |
| 25 | N | A | -2.0417 | |
| 26 | K | A | -1.5473 | |
| 27 | V | A | -0.8960 | |
| 28 | C | A | 0.0000 | |
| 29 | Y | A | -0.5267 | |
| 30 | K | A | -0.7737 | |
| 31 | N | A | -1.5997 |