| Chain sequence(s) |
H: QVQLVESGGGLVQPGGSLRLSCAASGLGPFPFSSYGWAWFRQAPGQGLEAVAAIGGDGSVTYYHPSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAAGGGSPEDGRYDYWGQGTLVTVS
input PDB |
| Selected Chain(s) | H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with H chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:51)
[INFO] Main: Simulation completed successfully. (00:01:52)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5458 | |
| 2 | V | H | -1.1545 | |
| 3 | Q | H | -1.2162 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.5282 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.1546 | |
| 8 | G | H | -0.5652 | |
| 9 | G | H | 0.2141 | |
| 10 | G | H | 0.7330 | |
| 11 | L | H | 1.3967 | |
| 12 | V | H | -0.0392 | |
| 13 | Q | H | -1.3325 | |
| 14 | P | H | -1.6052 | |
| 15 | G | H | -1.3981 | |
| 16 | G | H | -0.9022 | |
| 17 | S | H | -1.1254 | |
| 18 | L | H | -0.7250 | |
| 19 | R | H | -1.7994 | |
| 20 | L | H | 0.0000 | |
| 21 | S | H | -0.3984 | |
| 22 | C | H | 0.0000 | |
| 23 | A | H | -0.3491 | |
| 24 | A | H | 0.0000 | |
| 25 | S | H | -1.0816 | |
| 26 | G | H | -1.0648 | |
| 27 | L | H | 0.0000 | |
| 28 | G | H | -0.3330 | |
| 29 | P | H | 0.3377 | |
| 30 | F | H | 1.4401 | |
| 31 | P | H | 0.2291 | |
| 32 | F | H | 0.0000 | |
| 33 | S | H | -0.9730 | |
| 34 | S | H | -0.3837 | |
| 35 | Y | H | 0.0000 | |
| 36 | G | H | -0.6969 | |
| 37 | W | H | 0.0000 | |
| 38 | A | H | 0.0000 | |
| 39 | W | H | 0.0000 | |
| 40 | F | H | 0.0000 | |
| 41 | R | H | -0.3131 | |
| 42 | Q | H | -0.6695 | |
| 43 | A | H | -1.0134 | |
| 44 | P | H | -1.0832 | |
| 45 | G | H | -1.3573 | |
| 46 | Q | H | -1.7918 | |
| 47 | G | H | -1.1002 | |
| 48 | L | H | -0.1147 | |
| 49 | E | H | -1.0940 | |
| 50 | A | H | -0.3036 | |
| 51 | V | H | 0.0000 | |
| 52 | A | H | 0.0000 | |
| 53 | A | H | 0.5098 | |
| 54 | I | H | 0.0000 | |
| 55 | G | H | -0.4124 | |
| 56 | G | H | -1.1503 | |
| 57 | D | H | -2.0052 | |
| 58 | G | H | -1.1088 | |
| 59 | S | H | -0.3252 | |
| 60 | V | H | 0.9356 | |
| 61 | T | H | 1.1248 | |
| 62 | Y | H | 1.3065 | |
| 63 | Y | H | 0.0125 | |
| 64 | H | H | -0.7582 | |
| 65 | P | H | -0.9138 | |
| 66 | S | H | -1.0614 | |
| 67 | V | H | 0.0000 | |
| 68 | K | H | -1.8832 | |
| 69 | G | H | -1.4403 | |
| 70 | R | H | 0.0000 | |
| 71 | F | H | 0.0000 | |
| 72 | T | H | -0.6275 | |
| 73 | I | H | 0.0000 | |
| 74 | S | H | -0.3740 | |
| 75 | R | H | -1.3061 | |
| 76 | D | H | -1.7254 | |
| 77 | N | H | -2.2173 | |
| 78 | S | H | -1.7452 | |
| 79 | K | H | -2.4919 | |
| 80 | N | H | -1.9248 | |
| 81 | T | H | 0.0000 | |
| 82 | L | H | 0.0000 | |
| 83 | Y | H | -0.5667 | |
| 84 | L | H | 0.0000 | |
| 85 | Q | H | -1.2074 | |
| 86 | M | H | 0.0000 | |
| 87 | N | H | -1.2038 | |
| 88 | S | H | -1.1408 | |
| 89 | L | H | 0.0000 | |
| 90 | R | H | -2.2155 | |
| 91 | A | H | -1.7146 | |
| 92 | E | H | -2.2531 | |
| 93 | D | H | 0.0000 | |
| 94 | T | H | -0.4088 | |
| 95 | A | H | 0.0000 | |
| 96 | V | H | 0.9065 | |
| 97 | Y | H | 0.0000 | |
| 98 | Y | H | 0.2874 | |
| 99 | C | H | 0.0000 | |
| 100 | A | H | 0.0000 | |
| 101 | A | H | 0.0000 | |
| 102 | G | H | -1.3043 | |
| 103 | G | H | -2.2094 | |
| 104 | G | H | -2.6928 | |
| 105 | S | H | -2.1783 | |
| 106 | P | H | -2.3750 | |
| 107 | E | H | -3.3055 | |
| 108 | D | H | -3.9184 | |
| 109 | G | H | -3.2986 | |
| 110 | R | H | -3.4467 | |
| 111 | Y | H | -2.1342 | |
| 112 | D | H | -2.3278 | |
| 113 | Y | H | -0.7313 | |
| 114 | W | H | 0.0523 | |
| 115 | G | H | -0.1476 | |
| 116 | Q | H | -0.9216 | |
| 117 | G | H | 0.0291 | |
| 118 | T | H | 0.5867 | |
| 119 | L | H | 1.7439 | |
| 120 | V | H | 0.0000 | |
| 121 | T | H | 0.3816 | |
| 122 | V | H | 0.0000 | |
| 123 | S | H | -0.7731 |